Variant report

Variant	rs67955071
Chromosome Location	chr3:155380086-155380087
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155379377..155381344-chr3:155382651..155384726,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13076587	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13079863	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13084995	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13087389	0.86[ASN][1000 genomes]
rs13089059	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1835212	0.81[ASN][1000 genomes]
rs1879090	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1879091	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1879092	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2203886	0.90[ASN][1000 genomes]
rs2222275	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34810038	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs358727	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs358896	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs358897	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358898	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs358899	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358902	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358904	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs358905	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358906	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358910	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs358911	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs358912	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs386867	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4083041	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs417877	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6441006	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67428377	0.80[AMR][1000 genomes]
rs7428196	0.80[ASN][1000 genomes]
rs7645831	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv967244	chr3:155376242-155382118	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378200-155380200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:155378600-155381200	Enhancers	A549	lung
3	chr3:155378800-155380200	Enhancers	Fetal Intestine Small	intestine
4	chr3:155378800-155380200	Enhancers	HepG2	liver
5	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
6	chr3:155379000-155380200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr3:155379000-155382000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr3:155379400-155381400	Weak transcription	Fetal Lung	lung
9	chr3:155379400-155382000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:155379400-155382800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:155379400-155382800	Weak transcription	Pancreas	Pancrea
12	chr3:155379400-155383000	Weak transcription	Gastric	stomach
13	chr3:155379800-155381400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr3:155379800-155383000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:155380000-155380200	Enhancers	Stomach Mucosa	stomach
16	chr3:155380000-155381000	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:155380000-155381400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:155380000-155381600	Weak transcription	Small Intestine	intestine
19	chr3:155380000-155382800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:155380000-155382800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr3:155380000-155383000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr3:155380000-155383000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr3:155380000-155383200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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