Variant report

Variant	rs1879091
Chromosome Location	chr3:155389923-155389924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155388989..155390635-chr3:155403537..155406002,2	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1005736	0.86[JPT][hapmap]
rs10936013	0.87[CEU][hapmap];0.86[JPT][hapmap]
rs12486000	0.80[CEU][hapmap];0.85[JPT][hapmap]
rs12488087	0.86[JPT][hapmap]
rs12490748	0.86[JPT][hapmap]
rs12493067	0.84[JPT][hapmap]
rs13076587	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13079863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13082287	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs13084995	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13087389	0.88[ASN][1000 genomes]
rs13089059	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1519532	0.81[JPT][hapmap]
rs1519533	0.86[JPT][hapmap]
rs1519534	0.86[JPT][hapmap]
rs1519535	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs168601	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs173384	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs1835212	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs1879090	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1879092	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2203886	0.92[ASN][1000 genomes]
rs2222275	0.93[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2435194	0.83[JPT][hapmap]
rs34810038	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs358704	0.91[JPT][hapmap]
rs358706	0.95[JPT][hapmap]
rs358707	0.95[JPT][hapmap]
rs358708	0.82[CHB][hapmap];0.95[JPT][hapmap]
rs358710	0.82[JPT][hapmap]
rs358711	0.81[JPT][hapmap]
rs358712	0.82[JPT][hapmap]
rs358727	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs358896	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358897	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358898	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358903	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs358904	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs358905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358906	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358910	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358911	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358912	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs359541	0.82[JPT][hapmap]
rs359543	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs359545	0.81[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs359546	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs359560	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs359567	0.81[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs378905	0.82[JPT][hapmap]
rs386867	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs392521	0.82[JPT][hapmap]
rs394419	0.82[JPT][hapmap]
rs4083041	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs412664	0.95[JPT][hapmap]
rs417877	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs426069	0.80[ASN][1000 genomes]
rs430008	0.82[JPT][hapmap]
rs446716	0.82[JPT][hapmap]
rs448062	0.83[JPT][hapmap]
rs4679748	0.81[JPT][hapmap]
rs498378	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs592982	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs597718	0.82[JPT][hapmap]
rs629698	0.81[JPT][hapmap]
rs6441000	0.82[JPT][hapmap]
rs6441006	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6772682	0.86[JPT][hapmap]
rs6777741	0.91[JPT][hapmap]
rs67955071	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6808257	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs687462	0.82[JPT][hapmap]
rs7428196	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7645831	0.91[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155383400-155390200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155383400-155393800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155383400-155394000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155383600-155394000	Weak transcription	Pancreas	Pancrea
6	chr3:155385200-155394000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:155385400-155390000	Weak transcription	Fetal Intestine Large	intestine
8	chr3:155386200-155390000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:155389600-155393000	Enhancers	HepG2	liver
10	chr3:155389800-155390400	Enhancers	Primary neutrophils fromperipheralblood	blood

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