Variant report

Variant	rs359567
Chromosome Location	chr3:155310975-155310976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1005736	0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1007920	0.87[ASN][1000 genomes]
rs1084714	0.85[ASN][1000 genomes]
rs10936011	0.92[ASN][1000 genomes]
rs10936013	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12486000	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12488043	0.87[ASN][1000 genomes]
rs12488087	0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12490748	0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12493067	0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12632543	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13060809	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13076587	0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs13077520	0.93[ASN][1000 genomes]
rs13079863	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs13082287	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13084108	0.86[EUR][1000 genomes]
rs13089059	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs13095140	0.87[ASN][1000 genomes]
rs1519531	0.85[ASN][1000 genomes]
rs1519532	0.91[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1519533	0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1519534	0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1519535	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1568360	0.87[ASN][1000 genomes]
rs168601	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs173384	0.91[CHB][hapmap];0.96[JPT][hapmap];0.86[ASN][1000 genomes]
rs1879090	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1879091	0.81[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap]
rs2222275	0.86[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap]
rs358706	0.82[JPT][hapmap]
rs358707	0.82[JPT][hapmap]
rs358708	0.82[JPT][hapmap]
rs358727	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs358896	0.81[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap]
rs358899	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs358902	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs358903	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs358905	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs358911	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs358912	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs359541	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs359543	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs359544	0.87[ASN][1000 genomes]
rs359545	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs359546	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs359560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs386867	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs412664	0.81[JPT][hapmap]
rs4618256	0.91[ASN][1000 genomes]
rs4679748	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4680190	0.85[ASN][1000 genomes]
rs498378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs499014	0.85[ASN][1000 genomes]
rs520406	0.85[ASN][1000 genomes]
rs525486	0.86[ASN][1000 genomes]
rs529325	0.86[ASN][1000 genomes]
rs533168	0.84[ASN][1000 genomes]
rs545255	0.86[ASN][1000 genomes]
rs592982	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs595076	0.86[ASN][1000 genomes]
rs596578	0.86[ASN][1000 genomes]
rs597718	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs60592119	0.86[ASN][1000 genomes]
rs610514	0.88[ASN][1000 genomes]
rs629698	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6441000	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs673417	0.86[ASN][1000 genomes]
rs67428377	0.86[ASN][1000 genomes]
rs6772682	0.96[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6777148	0.83[ASN][1000 genomes]
rs6808257	0.88[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs687462	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs783549	0.84[ASN][1000 genomes]
rs783552	0.85[ASN][1000 genomes]
rs783553	0.83[ASN][1000 genomes]
rs9289956	0.91[JPT][hapmap]
rs934593	0.91[JPT][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
3	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
4	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:155289600-155315000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:155290200-155322200	Weak transcription	A549	lung
7	chr3:155303000-155313800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:155303600-155324400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr3:155304000-155317000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:155304000-155325800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:155308200-155322800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:155308400-155311800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr3:155308800-155312800	Weak transcription	Stomach Mucosa	stomach
14	chr3:155309000-155311800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr3:155310000-155313200	Weak transcription	Brain Anterior Caudate	brain
16	chr3:155310400-155311200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr3:155310400-155311800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr3:155310600-155311400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:155310600-155311800	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr3:155310600-155311800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:155310600-155314800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:155310800-155311200	Strong transcription	Rectal Mucosa Donor 31	rectum

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