Variant report

Variant	rs498378
Chromosome Location	chr3:155285836-155285837
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155285221..155287488-chr3:155402814..155405461,2	MCF-7	breast:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1005736	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1007920	0.85[ASN][1000 genomes]
rs1084714	0.86[ASN][1000 genomes]
rs10936011	0.90[ASN][1000 genomes]
rs10936013	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs12486000	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12488043	0.85[ASN][1000 genomes]
rs12488087	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12490748	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12493067	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12632543	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13060809	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13076587	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs13077520	0.90[ASN][1000 genomes]
rs13079863	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs13082287	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13084108	0.86[EUR][1000 genomes]
rs13089059	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs13095140	0.85[ASN][1000 genomes]
rs1519531	0.82[ASN][1000 genomes]
rs1519532	0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs1519533	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1519534	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1519535	0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1568360	0.85[ASN][1000 genomes]
rs168601	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs173384	0.90[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1879090	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs1879091	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs2222275	0.86[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap]
rs358706	0.80[JPT][hapmap]
rs358707	0.80[JPT][hapmap]
rs358708	0.81[JPT][hapmap]
rs358727	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs358896	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs358899	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs358902	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs358903	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs358905	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs358911	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs358912	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs359541	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs359543	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs359544	0.88[ASN][1000 genomes]
rs359545	0.87[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs359546	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs359560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs359567	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs386867	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs412664	0.81[JPT][hapmap]
rs4618256	0.88[ASN][1000 genomes]
rs4679748	0.91[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];1.00[MKK][hapmap];0.86[ASN][1000 genomes]
rs4680190	0.86[ASN][1000 genomes]
rs499014	0.86[ASN][1000 genomes]
rs520406	0.86[ASN][1000 genomes]
rs525486	0.88[ASN][1000 genomes]
rs529325	0.88[ASN][1000 genomes]
rs533168	0.85[ASN][1000 genomes]
rs545255	0.88[ASN][1000 genomes]
rs592982	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs595076	0.88[ASN][1000 genomes]
rs596578	0.88[ASN][1000 genomes]
rs597718	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs60592119	0.84[ASN][1000 genomes]
rs610514	0.89[ASN][1000 genomes]
rs629698	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs6441000	0.91[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs673417	0.88[ASN][1000 genomes]
rs67428377	0.84[ASN][1000 genomes]
rs6772682	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6777148	0.85[ASN][1000 genomes]
rs6808257	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs687462	0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs783549	0.85[ASN][1000 genomes]
rs783552	0.85[ASN][1000 genomes]
rs783553	0.84[ASN][1000 genomes]
rs9289956	0.90[JPT][hapmap]
rs934593	0.90[JPT][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:155259400-155289800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:155260200-155302600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:155266200-155287200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155272200-155302800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155273400-155312800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:155274200-155286000	Weak transcription	Pancreas	Pancrea
8	chr3:155274200-155293800	Weak transcription	Stomach Mucosa	stomach
9	chr3:155275600-155311800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:155275600-155312800	Weak transcription	Fetal Intestine Small	intestine
11	chr3:155278400-155289800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:155278400-155302800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr3:155278600-155287400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:155278800-155289600	Weak transcription	A549	lung
15	chr3:155282000-155295600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:155283000-155290800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr3:155283000-155315000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr3:155283200-155288200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:155285400-155286800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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