Variant report

Variant	rs9289956
Chromosome Location	chr3:155243995-155243996
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155239458..155242156-chr3:155242242..155245000,2	MCF-7	breast:
2	chr3:155230089..155232797-chr3:155242934..155246077,3	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1005736	0.91[JPT][hapmap]
rs10936013	0.91[JPT][hapmap]
rs12486000	0.90[JPT][hapmap]
rs12488087	0.91[JPT][hapmap]
rs12490748	0.91[JPT][hapmap]
rs12493067	0.90[JPT][hapmap]
rs13082287	0.91[JPT][hapmap]
rs1519532	0.85[JPT][hapmap]
rs1519533	0.91[JPT][hapmap]
rs1519534	0.91[JPT][hapmap]
rs1519535	0.91[JPT][hapmap]
rs168601	0.91[JPT][hapmap]
rs173384	0.95[JPT][hapmap]
rs2222275	0.81[JPT][hapmap]
rs359541	0.95[JPT][hapmap]
rs359543	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs359545	0.95[JPT][hapmap]
rs359546	0.91[JPT][hapmap]
rs359560	0.91[JPT][hapmap]
rs359567	0.91[JPT][hapmap]
rs4679748	1.00[CEU][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs498378	0.90[JPT][hapmap]
rs520406	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs529325	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs592982	0.82[CEU][hapmap];0.95[JPT][hapmap]
rs597718	0.95[JPT][hapmap]
rs610514	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs629698	1.00[CEU][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6441000	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6772682	0.91[JPT][hapmap]
rs6808257	0.91[JPT][hapmap]
rs687462	0.95[JPT][hapmap]
rs934592	0.97[ASN][1000 genomes]
rs934593	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:155230800-155244400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:155231200-155253000	Weak transcription	A549	lung
7	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
8	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
10	chr3:155232400-155244000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:155232400-155247000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr3:155232400-155250400	Weak transcription	Gastric	stomach
13	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
14	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:155238000-155249000	Strong transcription	Dnd41	blood
17	chr3:155239400-155244000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:155239800-155248200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr3:155241000-155245000	Strong transcription	Thymus	Thymus
20	chr3:155241800-155248600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:155241800-155248800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:155241800-155248800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:155241800-155249000	Weak transcription	Fetal Thymus	thymus
24	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:155242000-155248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:155243200-155244600	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:155243800-155244200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr3:155243800-155244600	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr3:155243800-155244800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr3:155243800-155244800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr3:155243800-155244800	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr3:155243800-155244800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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