Variant report

Variant	rs934592
Chromosome Location	chr3:155244741-155244742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155239458..155242156-chr3:155242242..155245000,2	MCF-7	breast:
2	chr3:155230089..155232797-chr3:155242934..155246077,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1084714	0.87[AMR][1000 genomes]
rs173384	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs359541	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs359544	0.81[ASN][1000 genomes]
rs359545	0.81[ASN][1000 genomes]
rs4679748	0.83[ASN][1000 genomes]
rs4680190	0.90[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs499014	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs525486	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs533168	0.85[AMR][1000 genomes]
rs545255	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs592982	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs595076	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs596578	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs597718	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs610514	0.80[ASN][1000 genomes]
rs629698	0.80[ASN][1000 genomes]
rs6441000	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs673417	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6777148	0.87[AMR][1000 genomes]
rs687462	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs783549	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs783553	0.81[AMR][1000 genomes]
rs9289956	0.97[ASN][1000 genomes]
rs934593	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763309	chr3:155193454-155256770	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155200800-155251400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr3:155230600-155249000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr3:155230800-155248400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:155231200-155253000	Weak transcription	A549	lung
6	chr3:155232200-155253000	Weak transcription	Fetal Intestine Large	intestine
7	chr3:155232200-155258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
9	chr3:155232400-155247000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:155232400-155250400	Weak transcription	Gastric	stomach
11	chr3:155235400-155249000	Weak transcription	Fetal Intestine Small	intestine
12	chr3:155236200-155249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:155237000-155248800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr3:155238000-155249000	Strong transcription	Dnd41	blood
15	chr3:155239800-155248200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr3:155241000-155245000	Strong transcription	Thymus	Thymus
17	chr3:155241800-155248600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr3:155241800-155248800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr3:155241800-155248800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:155241800-155249000	Weak transcription	Fetal Thymus	thymus
21	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:155242000-155248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr3:155243800-155244800	Enhancers	H1 Cell Line	embryonic stem cell
24	chr3:155243800-155244800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr3:155243800-155244800	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr3:155243800-155244800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr3:155244400-155244800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:155244400-155245000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:155244600-155248800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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