Variant report

Variant	rs596578
Chromosome Location	chr3:155258891-155258892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1084714	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10936011	0.82[ASN][1000 genomes]
rs12486000	0.81[ASN][1000 genomes]
rs12493067	0.82[ASN][1000 genomes]
rs13060809	0.81[ASN][1000 genomes]
rs13077520	0.83[ASN][1000 genomes]
rs13082287	0.81[ASN][1000 genomes]
rs168601	0.96[ASN][1000 genomes]
rs173384	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs359541	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs359543	0.98[ASN][1000 genomes]
rs359544	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs359545	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs359546	0.90[ASN][1000 genomes]
rs359560	0.85[ASN][1000 genomes]
rs4618256	0.81[ASN][1000 genomes]
rs4679748	0.96[ASN][1000 genomes]
rs4680190	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs498378	0.88[ASN][1000 genomes]
rs499014	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs520406	0.95[ASN][1000 genomes]
rs525486	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs529325	0.97[ASN][1000 genomes]
rs533168	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs545255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs592982	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595076	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs597718	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs610514	0.99[ASN][1000 genomes]
rs629698	0.99[ASN][1000 genomes]
rs6441000	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs673417	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6777148	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs687462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7636015	0.81[AMR][1000 genomes]
rs783549	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs783552	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs783553	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs934592	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs934593	0.91[AMR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155230600-155271400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:155232200-155274000	Weak transcription	Pancreas	Pancrea
3	chr3:155241800-155273000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:155248400-155260000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:155253400-155259000	Strong transcription	Dnd41	blood
6	chr3:155253600-155273600	Weak transcription	Gastric	stomach
7	chr3:155253800-155266200	Weak transcription	Fetal Kidney	kidney
8	chr3:155254000-155259000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:155256600-155259800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:155257000-155289600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:155257400-155266000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:155258400-155260000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr3:155258600-155259800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr3:155258600-155259800	Strong transcription	Fetal Thymus	thymus
15	chr3:155258800-155259400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr3:155258800-155259600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
17	chr3:155258800-155259600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
18	chr3:155258800-155259800	ZNF genes & repeats	Thymus	Thymus
19	chr3:155258800-155260200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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