Variant report

Variant	rs13060809
Chromosome Location	chr3:155343088-155343089
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1005736	0.92[ASN][1000 genomes]
rs1007920	0.93[ASN][1000 genomes]
rs10936011	0.99[ASN][1000 genomes]
rs10936013	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12486000	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12488043	0.93[ASN][1000 genomes]
rs12488087	0.93[ASN][1000 genomes]
rs12490748	0.92[ASN][1000 genomes]
rs12493067	0.99[ASN][1000 genomes]
rs12632543	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13077520	0.98[ASN][1000 genomes]
rs13082287	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13084108	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13087389	0.80[ASN][1000 genomes]
rs13095140	0.93[ASN][1000 genomes]
rs1519531	0.90[ASN][1000 genomes]
rs1519532	0.92[ASN][1000 genomes]
rs1519533	0.92[ASN][1000 genomes]
rs1519534	0.92[ASN][1000 genomes]
rs1519535	0.92[ASN][1000 genomes]
rs1568360	0.93[ASN][1000 genomes]
rs168601	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs173384	0.80[ASN][1000 genomes]
rs2222275	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs359541	0.80[ASN][1000 genomes]
rs359543	0.81[ASN][1000 genomes]
rs359544	0.81[ASN][1000 genomes]
rs359545	0.81[ASN][1000 genomes]
rs359546	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs359560	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36117156	0.82[ASN][1000 genomes]
rs4618256	0.97[ASN][1000 genomes]
rs498378	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs525486	0.81[ASN][1000 genomes]
rs529325	0.81[ASN][1000 genomes]
rs545255	0.81[ASN][1000 genomes]
rs592982	0.81[ASN][1000 genomes]
rs595076	0.81[ASN][1000 genomes]
rs596578	0.81[ASN][1000 genomes]
rs597718	0.81[ASN][1000 genomes]
rs60592119	0.92[ASN][1000 genomes]
rs610514	0.82[ASN][1000 genomes]
rs629698	0.82[ASN][1000 genomes]
rs673417	0.81[ASN][1000 genomes]
rs67428377	0.92[ASN][1000 genomes]
rs6772682	0.93[ASN][1000 genomes]
rs6808257	0.92[ASN][1000 genomes]
rs883701	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822300	chr3:155338203-155344148	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv822301	chr3:155338203-155344202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155336800-155346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155338400-155347000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155338600-155346400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:155338600-155347000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155343000-155346400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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