Variant report

Variant	rs36117156
Chromosome Location	chr3:155353631-155353632
allele	AC/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155348418..155351165-chr3:155351201..155354073,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1005736	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1007920	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10936011	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12486000	0.82[ASN][1000 genomes]
rs12488043	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12488087	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12490748	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12493067	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12632543	0.82[ASN][1000 genomes]
rs13060809	0.82[ASN][1000 genomes]
rs13077520	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13082287	0.81[ASN][1000 genomes]
rs13095140	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1519531	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1519532	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519533	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519534	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1519535	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1568360	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4618256	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60592119	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67428377	0.89[ASN][1000 genomes]
rs6772682	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6808257	0.87[ASN][1000 genomes]
rs883701	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155347200-155357800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155347800-155355600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155347800-155357600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:155348000-155355600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:155348200-155357800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155350400-155360000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155350800-155355600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:155352000-155357000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:155352400-155355400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:155352400-155357200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:155352600-155354800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:155352600-155355600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:155352600-155357600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr3:155352600-155357800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:155352600-155359800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr3:155352800-155357600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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