Variant report

Variant	rs1519534
Chromosome Location	chr3:155355295-155355296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs1005736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1007920	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10936011	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10936013	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12486000	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12488043	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12488087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12490748	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12493067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12632543	0.85[ASN][1000 genomes]
rs13060809	0.92[ASN][1000 genomes]
rs13076587	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs13077520	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13079863	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs13082287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13084995	0.81[ASN][1000 genomes]
rs13087389	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13089059	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs13095140	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519531	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1519532	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519535	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1568360	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs168601	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs173384	0.86[CHB][hapmap];0.96[JPT][hapmap]
rs1879090	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs1879091	0.86[JPT][hapmap]
rs1879092	0.81[ASN][1000 genomes]
rs2203886	0.81[ASN][1000 genomes]
rs2222275	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs34810038	0.80[ASN][1000 genomes]
rs358706	0.82[JPT][hapmap]
rs358707	0.82[JPT][hapmap]
rs358708	0.82[JPT][hapmap]
rs358727	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs358896	0.83[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs358898	0.81[ASN][1000 genomes]
rs358899	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs358902	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs358903	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs358905	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs358910	0.81[ASN][1000 genomes]
rs358911	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs358912	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs359541	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs359543	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs359545	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs359546	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs359560	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs359567	0.96[CHB][hapmap];1.00[JPT][hapmap]
rs36117156	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs386867	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs4083041	0.81[ASN][1000 genomes]
rs412664	0.81[JPT][hapmap]
rs4618256	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4679748	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs498378	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs592982	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs597718	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs60592119	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629698	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs6441000	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs6441006	0.81[ASN][1000 genomes]
rs67428377	1.00[ASN][1000 genomes]
rs6772682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6808257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs687462	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs883701	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9289956	0.91[JPT][hapmap]
rs934593	0.91[JPT][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155347200-155357800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155347800-155355600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155347800-155357600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:155348000-155355600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:155348200-155357800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155350400-155360000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr3:155350800-155355600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:155352000-155357000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:155352400-155355400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:155352400-155357200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:155352600-155355600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:155352600-155357600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:155352600-155357800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr3:155352600-155359800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:155352800-155357600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:155354000-155363400	Weak transcription	Fetal Intestine Small	intestine
17	chr3:155355200-155355400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:155355200-155356200	Enhancers	Stomach Mucosa	stomach

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