Variant report

Variant	rs4930400
Chromosome Location	chr11:64269315-64269316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10736732	1.00[EUR][1000 genomes]
rs10751011	1.00[EUR][1000 genomes]
rs12272361	1.00[EUR][1000 genomes]
rs61885698	1.00[EUR][1000 genomes]
rs61885700	1.00[EUR][1000 genomes]
rs6591856	1.00[EUR][1000 genomes]
rs7112387	1.00[EUR][1000 genomes]
rs7115332	1.00[EUR][1000 genomes]
rs73490282	1.00[EUR][1000 genomes]
rs73490294	1.00[EUR][1000 genomes]
rs7944545	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832187	chr11:64121969-64312300	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1035485	chr11:64228847-64354869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64266000-64271600	Weak transcription	Spleen	Spleen
2	chr11:64267400-64271200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:64268000-64272000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:64268800-64269400	Enhancers	Colonic Mucosa	Colon
5	chr11:64268800-64269400	Flanking Active TSS	K562	blood
6	chr11:64268800-64269600	Enhancers	HepG2	liver
7	chr11:64268800-64271600	Enhancers	Fetal Intestine Large	intestine
8	chr11:64269000-64269400	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr11:64269000-64269400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr11:64269000-64269400	Enhancers	Pancreas	Pancrea
11	chr11:64269200-64269400	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr11:64269200-64269400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr11:64269200-64269400	Flanking Active TSS	A549	lung
14	chr11:64269200-64269600	Flanking Active TSS	Fetal Intestine Small	intestine
15	chr11:64269200-64269800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr11:64269200-64270800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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