Variant report

Variant	rs4935440
Chromosome Location	chr10:55226154-55226155
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1198113	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs12415407	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1386556	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1487474	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16937442	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16937443	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16937445	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16937446	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17620281	0.91[EUR][1000 genomes]
rs17620381	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17693434	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2891463	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs351811	0.83[EUR][1000 genomes]
rs351830	0.80[EUR][1000 genomes]
rs351833	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs351834	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs351836	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs453818	0.84[EUR][1000 genomes]
rs58946145	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859822	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7075123	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7081251	0.90[EUR][1000 genomes]
rs7085036	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752952	chr10:54900994-55497594	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1041908	chr10:55003164-55283251	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv540629	chr10:55003164-55283251	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040943	chr10:55040577-55279797	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv540630	chr10:55040577-55279797	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1037480	chr10:55102814-55289571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2750963	chr10:55150127-55237139	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2755889	chr10:55150173-55278481	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv1048399	chr10:55151470-55313737	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2756288	chr10:55169541-55237139	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1044282	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv540631	chr10:55186501-55516392	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1043501	chr10:55186701-55516253	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv540632	chr10:55186701-55516253	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv1050323	chr10:55190079-55546575	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv523436	chr10:55198707-55252076	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv947616	chr10:55217154-55229143	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:55223600-55234000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr10:55223800-55228200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:55224800-55226400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:55225800-55228000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links