Variant report

Variant	rs4936633
Chromosome Location	chr11:121349372-121349373
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:121342384..121344746-chr11:121348986..121351578,2	MCF-7	breast:
2	chr11:121322245..121324766-chr11:121347712..121349803,2	MCF-7	breast:
3	chr11:121330064..121332974-chr11:121346405..121349549,4	MCF-7	breast:
4	chr11:121322800..121324448-chr11:121348975..121350802,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000246790	Chromatin interaction
ENSG00000137642	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2276345	0.81[EUR][1000 genomes]
rs3781826	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4598682	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3401284	chr11:121347342-121351640	Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121337400-121349400	Weak transcription	Ovary	ovary
2	chr11:121337400-121350600	Weak transcription	Left Ventricle	heart
3	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
4	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
5	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
6	chr11:121339800-121351000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
7	chr11:121339800-121351000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:121340400-121349400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr11:121340800-121351400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:121341000-121349600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:121342400-121353000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:121342600-121349600	Weak transcription	Fetal Stomach	stomach
13	chr11:121344200-121358200	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:121344600-121350800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr11:121345000-121350400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr11:121346200-121350600	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr11:121346200-121350600	Enhancers	Stomach Mucosa	stomach
18	chr11:121346400-121350200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr11:121346600-121350200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
20	chr11:121346800-121349600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:121347000-121349400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr11:121347000-121350000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:121347200-121350600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:121347400-121352800	Weak transcription	NHEK	skin
25	chr11:121347600-121349800	Strong transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:121347800-121359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr11:121348000-121349600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr11:121348000-121350200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr11:121348000-121350600	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:121348200-121349400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:121348200-121349400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr11:121348200-121350400	Enhancers	Pancreas	Pancrea
33	chr11:121348200-121350600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr11:121348200-121351000	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr11:121348200-121351400	Strong transcription	Duodenum Mucosa	Duodenum
36	chr11:121348200-121351400	Strong transcription	Fetal Intestine Large	intestine
37	chr11:121348200-121351400	Strong transcription	Fetal Intestine Small	intestine
38	chr11:121348400-121349600	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr11:121348400-121350800	Strong transcription	Brain Hippocampus Middle	brain
40	chr11:121348600-121349400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:121348600-121349400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr11:121348800-121349400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr11:121348800-121349400	Strong transcription	Brain Anterior Caudate	brain
44	chr11:121348800-121349400	Enhancers	Esophagus	oesophagus
45	chr11:121348800-121349600	Genic enhancers	H1 Cell Line	embryonic stem cell
46	chr11:121348800-121349600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:121348800-121349600	Genic enhancers	HUES48 Cell Line	embryonic stem cell
48	chr11:121348800-121349600	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:121348800-121349800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:121348800-121349800	Strong transcription	Colonic Mucosa	Colon

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