Variant report

Variant	rs3781826
Chromosome Location	chr11:121343046-121343047
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121314908..121316644-chr11:121341905..121344129,2	MCF-7	breast:
2	chr11:121342384..121344746-chr11:121348986..121351578,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2101756	0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs2276345	1.00[TSI][hapmap]
rs4598682	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4936633	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6589884	0.94[JPT][hapmap]
rs985421	0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121333200-121343400	Enhancers	Liver	Liver
2	chr11:121337400-121347000	Weak transcription	Gastric	stomach
3	chr11:121337400-121349400	Weak transcription	Ovary	ovary
4	chr11:121337400-121350600	Weak transcription	Left Ventricle	heart
5	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
6	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
7	chr11:121338200-121348800	Weak transcription	Colonic Mucosa	Colon
8	chr11:121338200-121349000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:121338600-121343800	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:121339000-121343200	Strong transcription	Fetal Intestine Small	intestine
11	chr11:121339000-121343800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr11:121339000-121349200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
14	chr11:121339200-121343600	Weak transcription	NHEK	skin
15	chr11:121339200-121343800	Weak transcription	HMEC	breast
16	chr11:121339200-121344000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:121339200-121345600	Genic enhancers	GM12878-XiMat	blood
18	chr11:121339200-121346200	Weak transcription	Stomach Mucosa	stomach
19	chr11:121339200-121346800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:121339200-121347200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:121339200-121348200	Weak transcription	Pancreas	Pancrea
22	chr11:121339200-121348800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:121339200-121349000	Weak transcription	Lung	lung
24	chr11:121339200-121349000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr11:121339400-121345000	Strong transcription	HepG2	liver
26	chr11:121339400-121345600	Genic enhancers	Primary neutrophils fromperipheralblood	blood
27	chr11:121339800-121343800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr11:121339800-121347200	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr11:121339800-121351000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
30	chr11:121339800-121351000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr11:121340000-121348200	Weak transcription	Esophagus	oesophagus
32	chr11:121340000-121349000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:121340200-121344000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr11:121340400-121349400	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr11:121340600-121343200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr11:121340600-121343400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr11:121340600-121343400	Strong transcription	Dnd41	blood
38	chr11:121340600-121344200	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr11:121340600-121344400	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:121340600-121348400	Genic enhancers	Primary T cells fromperipheralblood	blood
41	chr11:121340800-121349000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
42	chr11:121340800-121351400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:121341000-121346600	Strong transcription	Fetal Thymus	thymus
44	chr11:121341000-121348200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:121341000-121349600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr11:121341200-121343800	Weak transcription	Fetal Brain Female	brain
47	chr11:121341200-121345400	Strong transcription	Primary T cells from cord blood	blood
48	chr11:121341200-121349000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr11:121341800-121344200	Enhancers	Brain Angular Gyrus	brain
50	chr11:121342000-121343800	Enhancers	Fetal Brain Male	brain

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