Variant report

Variant	rs985421
Chromosome Location	chr11:121362316-121362317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2101756	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3758900	0.88[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs3781826	0.94[JPT][hapmap]
rs4598682	0.99[ASN][1000 genomes]
rs6589884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121365000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
3	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
4	chr11:121350200-121367800	Weak transcription	Fetal Kidney	kidney
5	chr11:121350400-121393200	Weak transcription	Gastric	stomach
6	chr11:121350800-121368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:121351200-121366600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr11:121352800-121377600	Strong transcription	HepG2	liver
10	chr11:121353600-121364400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:121353600-121367200	Weak transcription	Fetal Lung	lung
12	chr11:121353600-121377000	Weak transcription	Pancreas	Pancrea
13	chr11:121353800-121365000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:121353800-121365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:121353800-121374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:121354200-121365000	Weak transcription	HMEC	breast
17	chr11:121354400-121364000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr11:121354400-121364600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:121354400-121365000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:121354600-121363000	Strong transcription	Liver	Liver
21	chr11:121354600-121365000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:121355000-121364200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:121355200-121362600	Strong transcription	Fetal Thymus	thymus
24	chr11:121355200-121363000	Strong transcription	Dnd41	blood
25	chr11:121355200-121364400	Strong transcription	Primary T cells from cord blood	blood
26	chr11:121355400-121364600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:121355600-121363400	Strong transcription	Fetal Intestine Large	intestine
28	chr11:121355600-121365000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr11:121355800-121362600	Strong transcription	Primary hematopoietic stem cells	blood
30	chr11:121355800-121364000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:121356000-121362800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr11:121356000-121363000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:121356000-121364000	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr11:121356000-121365000	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:121356600-121362800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr11:121356600-121363200	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:121357600-121362400	Strong transcription	Fetal Brain Female	brain
38	chr11:121357600-121362400	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr11:121357600-121363000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:121357800-121363000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:121357800-121363800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr11:121358400-121363400	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr11:121358400-121364400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:121358600-121362800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr11:121358600-121363400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:121358800-121362600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:121358800-121366800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:121358800-121367400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:121359000-121364800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr11:121359000-121365800	Weak transcription	Brain Angular Gyrus	brain

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