Variant report

Variant	rs6589884
Chromosome Location	chr11:121382172-121382173
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2101756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3758900	0.88[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs3781826	0.94[JPT][hapmap]
rs4598682	0.99[ASN][1000 genomes]
rs753780	1.00[CEU][hapmap]
rs985421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
2	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
3	chr11:121350400-121393200	Weak transcription	Gastric	stomach
4	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:121359200-121384200	Weak transcription	Fetal Stomach	stomach
6	chr11:121360800-121384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:121365800-121392600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:121368400-121395800	Weak transcription	Fetal Kidney	kidney
9	chr11:121368600-121387000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:121369000-121396800	Weak transcription	Ovary	ovary
11	chr11:121369400-121391000	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:121369800-121383000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:121371200-121383600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:121371200-121384000	Weak transcription	Thymus	Thymus
15	chr11:121371600-121384000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:121371800-121383600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:121373400-121383600	Weak transcription	Fetal Thymus	thymus
18	chr11:121375200-121390200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr11:121375400-121391000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:121375800-121383600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:121377000-121390400	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr11:121377200-121384000	Weak transcription	Fetal Lung	lung
23	chr11:121377400-121383200	Weak transcription	Fetal Intestine Small	intestine
24	chr11:121377400-121383400	Weak transcription	Aorta	Aorta
25	chr11:121377400-121383800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr11:121377400-121384400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:121377400-121384600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:121377400-121384600	Weak transcription	NHEK	skin
29	chr11:121377400-121384800	Weak transcription	Spleen	Spleen
30	chr11:121377400-121388800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:121377400-121390800	Weak transcription	HMEC	breast
32	chr11:121377400-121394400	Weak transcription	Pancreas	Pancrea
33	chr11:121377400-121396400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:121377600-121383600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:121378000-121395800	Strong transcription	Primary T cells from cord blood	blood
36	chr11:121378400-121397800	Strong transcription	HepG2	liver
37	chr11:121378600-121388400	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr11:121379000-121383200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr11:121379000-121383600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:121379000-121385000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:121379200-121391200	Strong transcription	Primary B cells from cord blood	blood
42	chr11:121379200-121392200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:121379200-121395800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr11:121379400-121382800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr11:121379400-121383200	Weak transcription	Brain Angular Gyrus	brain
46	chr11:121379400-121383800	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr11:121379400-121384600	Weak transcription	Fetal Brain Female	brain
48	chr11:121379400-121385600	Weak transcription	Brain Germinal Matrix	brain
49	chr11:121379400-121389600	Strong transcription	Dnd41	blood
50	chr11:121379400-121390400	Strong transcription	GM12878-XiMat	blood

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