Variant report

Variant	rs2101756
Chromosome Location	chr11:121369250-121369251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17125497	1.00[EUR][1000 genomes]
rs3758900	0.88[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3781826	0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs4598682	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6589884	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs985421	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv522474	chr11:121356968-121436270	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
2	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
3	chr11:121350400-121393200	Weak transcription	Gastric	stomach
4	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:121352800-121377600	Strong transcription	HepG2	liver
6	chr11:121353600-121377000	Weak transcription	Pancreas	Pancrea
7	chr11:121353800-121374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:121359200-121369800	Weak transcription	Left Ventricle	heart
9	chr11:121359200-121384200	Weak transcription	Fetal Stomach	stomach
10	chr11:121359800-121377000	Weak transcription	Esophagus	oesophagus
11	chr11:121360800-121369800	Weak transcription	Brain Hippocampus Middle	brain
12	chr11:121360800-121384400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:121364000-121375800	Strong transcription	Liver	Liver
14	chr11:121365000-121371200	Strong transcription	Fetal Intestine Large	intestine
15	chr11:121365000-121371200	Strong transcription	Fetal Intestine Small	intestine
16	chr11:121365800-121371200	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:121365800-121372200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:121365800-121374000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:121365800-121374600	Strong transcription	Dnd41	blood
20	chr11:121365800-121377200	Weak transcription	Small Intestine	intestine
21	chr11:121365800-121392600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:121366000-121373600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:121366000-121374200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:121366000-121374600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:121366200-121372800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:121366200-121373200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr11:121366200-121373400	Strong transcription	Fetal Thymus	thymus
28	chr11:121366200-121373600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr11:121366400-121371200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:121366400-121375200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:121366400-121376400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr11:121366600-121371600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:121366600-121372800	Strong transcription	Primary hematopoietic stem cells	blood
34	chr11:121366800-121369400	Strong transcription	Fetal Brain Female	brain
35	chr11:121366800-121371400	Strong transcription	H9 Cell Line	embryonic stem cell
36	chr11:121366800-121371600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr11:121366800-121371800	Strong transcription	Duodenum Mucosa	Duodenum
38	chr11:121366800-121372800	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:121366800-121373800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr11:121366800-121374600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:121367000-121369800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr11:121367000-121370200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:121367000-121370400	Strong transcription	Pancreatic Islets	Pancreatic Islet
44	chr11:121367000-121372800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:121367200-121369600	Strong transcription	GM12878-XiMat	blood
46	chr11:121367200-121370000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:121367200-121370200	Strong transcription	Fetal Lung	lung
48	chr11:121367200-121373600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:121367200-121376600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr11:121367400-121370000	Strong transcription	Primary T helper cells PMA-I stimulated	--

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