Variant report

Variant	rs4938779
Chromosome Location	chr11:119966884-119966885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12273529	1.00[ASN][1000 genomes]
rs12285338	1.00[ASN][1000 genomes]
rs3895896	0.98[EUR][1000 genomes]
rs3915715	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4938776	0.97[EUR][1000 genomes]
rs60480291	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897956	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897958	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897959	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900463	1.00[ASN][1000 genomes]
rs7111010	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7929336	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7937779	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949126	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119963200-119967000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:119965400-119967000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:119965400-119968000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:119965800-119968000	Enhancers	Brain Anterior Caudate	brain
5	chr11:119965800-119970400	Enhancers	Fetal Intestine Large	intestine
6	chr11:119966000-119969000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:119966000-119969000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:119966200-119967200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr11:119966200-119967400	Enhancers	Fetal Intestine Small	intestine
10	chr11:119966200-119968200	Enhancers	Brain Germinal Matrix	brain
11	chr11:119966400-119970000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:119966600-119967800	Weak transcription	Brain Angular Gyrus	brain
13	chr11:119966600-119968000	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr11:119966600-119968200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:119966600-119970000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr11:119966800-119968000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr11:119966800-119978200	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links