Variant report

Variant	rs61900463
Chromosome Location	chr11:119974582-119974583
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11217693	0.97[EUR][1000 genomes]
rs12273529	1.00[ASN][1000 genomes]
rs12285338	1.00[ASN][1000 genomes]
rs1349688	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3915715	1.00[ASN][1000 genomes]
rs4938779	1.00[ASN][1000 genomes]
rs4938783	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60480291	1.00[ASN][1000 genomes]
rs61897956	1.00[ASN][1000 genomes]
rs61897958	1.00[ASN][1000 genomes]
rs61897959	1.00[ASN][1000 genomes]
rs7111010	1.00[ASN][1000 genomes]
rs7929336	1.00[ASN][1000 genomes]
rs7937779	1.00[ASN][1000 genomes]
rs7949126	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119966800-119978200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:119973200-119976600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:119973600-119976400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119973800-119978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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