Variant report

Variant	rs11217693
Chromosome Location	chr11:119975273-119975274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1073634	0.90[ASN][1000 genomes]
rs1073636	0.90[ASN][1000 genomes]
rs10892536	0.81[ASN][1000 genomes]
rs10892538	0.91[ASN][1000 genomes]
rs10892542	0.91[ASN][1000 genomes]
rs1110704	0.86[ASN][1000 genomes]
rs11217683	0.81[ASN][1000 genomes]
rs11217684	0.81[ASN][1000 genomes]
rs11217690	0.81[ASN][1000 genomes]
rs11217691	0.88[ASN][1000 genomes]
rs11217692	0.89[ASN][1000 genomes]
rs11217694	0.89[ASN][1000 genomes]
rs11217696	0.90[ASN][1000 genomes]
rs11217697	0.88[ASN][1000 genomes]
rs11604169	0.90[ASN][1000 genomes]
rs12417601	0.91[ASN][1000 genomes]
rs12418174	0.81[ASN][1000 genomes]
rs12418635	0.83[ASN][1000 genomes]
rs12419706	0.84[ASN][1000 genomes]
rs12421654	0.91[ASN][1000 genomes]
rs1349688	0.92[EUR][1000 genomes]
rs2276159	0.90[ASN][1000 genomes]
rs2368961	0.90[ASN][1000 genomes]
rs3895896	0.81[ASN][1000 genomes]
rs3896312	0.81[ASN][1000 genomes]
rs3915646	0.83[ASN][1000 genomes]
rs4938776	0.83[ASN][1000 genomes]
rs4938778	0.81[ASN][1000 genomes]
rs4938783	0.91[EUR][1000 genomes]
rs57144901	0.89[ASN][1000 genomes]
rs58043425	0.89[ASN][1000 genomes]
rs61900463	0.97[EUR][1000 genomes]
rs6589795	0.84[ASN][1000 genomes]
rs6589798	0.84[ASN][1000 genomes]
rs6589800	0.90[ASN][1000 genomes]
rs6589801	0.90[ASN][1000 genomes]
rs7109733	0.83[ASN][1000 genomes]
rs7118773	0.83[ASN][1000 genomes]
rs7131339	0.90[ASN][1000 genomes]
rs7938843	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119966800-119978200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:119973200-119976600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:119973600-119976400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119973800-119978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:119974800-119975400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr11:119974800-119975400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr11:119975200-119975400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr11:119975200-119977000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:119975200-119980400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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