Variant report

Variant	rs3896312
Chromosome Location	chr11:119964222-119964223
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1073634	0.88[ASN][1000 genomes]
rs1073636	0.88[ASN][1000 genomes]
rs10892536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892538	0.86[ASN][1000 genomes]
rs10892542	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1110704	0.81[ASN][1000 genomes]
rs11217677	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11217678	0.92[ASN][1000 genomes]
rs11217679	0.89[ASN][1000 genomes]
rs11217683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11217690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11217692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11217693	0.81[ASN][1000 genomes]
rs11217694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11217696	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11217697	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11217699	1.00[EUR][1000 genomes]
rs11604169	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12417601	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12418174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418635	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12419224	0.83[AMR][1000 genomes]
rs12419706	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12421654	0.92[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2276159	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2276160	1.00[EUR][1000 genomes]
rs2368961	0.85[ASN][1000 genomes]
rs3781667	1.00[EUR][1000 genomes]
rs3781668	1.00[EUR][1000 genomes]
rs3781669	1.00[EUR][1000 genomes]
rs3824881	1.00[EUR][1000 genomes]
rs3886765	0.83[AMR][1000 genomes]
rs3895896	0.96[ASN][1000 genomes]
rs3915646	0.95[ASN][1000 genomes]
rs4938776	0.95[ASN][1000 genomes]
rs4938778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57144901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58043425	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61095798	1.00[EUR][1000 genomes]
rs6589795	0.93[ASN][1000 genomes]
rs6589798	0.85[ASN][1000 genomes]
rs6589800	0.88[ASN][1000 genomes]
rs6589801	0.88[ASN][1000 genomes]
rs7109733	0.95[ASN][1000 genomes]
rs7118773	0.98[ASN][1000 genomes]
rs7131339	0.85[ASN][1000 genomes]
rs7938843	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119960200-119964400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:119961800-119966000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:119962400-119965800	Weak transcription	Esophagus	oesophagus
4	chr11:119963200-119967000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:119963400-119965400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:119963400-119965400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:119963400-119965600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:119963400-119966200	Weak transcription	Fetal Intestine Small	intestine
9	chr11:119964200-119964400	Enhancers	Brain Angular Gyrus	brain
10	chr11:119964200-119964400	Enhancers	Brain Anterior Caudate	brain
11	chr11:119964200-119965400	Weak transcription	Brain Substantia Nigra	brain
12	chr11:119964200-119965800	Weak transcription	Fetal Intestine Large	intestine
13	chr11:119964200-119966600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links