Variant report

Variant	rs57144901
Chromosome Location	chr11:119977380-119977381
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119779711..119781214-chr11:119976355..119978913,2	MCF-7	breast:
2	chr11:119351964..119353537-chr11:119977212..119979558,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1073634	0.96[ASN][1000 genomes]
rs1073636	0.96[ASN][1000 genomes]
rs10892536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10892538	0.95[ASN][1000 genomes]
rs10892542	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1110704	0.89[ASN][1000 genomes]
rs11217677	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11217678	0.84[ASN][1000 genomes]
rs11217679	0.81[ASN][1000 genomes]
rs11217683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11217684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11217685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11217690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11217691	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217693	0.89[ASN][1000 genomes]
rs11217694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217696	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11217697	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11217699	1.00[EUR][1000 genomes]
rs11604169	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12417601	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12418174	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12418635	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12419224	0.83[AMR][1000 genomes]
rs12419706	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12421654	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2276159	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2276160	1.00[EUR][1000 genomes]
rs2368961	0.93[ASN][1000 genomes]
rs3781667	1.00[EUR][1000 genomes]
rs3781668	1.00[EUR][1000 genomes]
rs3781669	1.00[EUR][1000 genomes]
rs3824881	1.00[EUR][1000 genomes]
rs3886765	0.83[AMR][1000 genomes]
rs3895896	0.87[ASN][1000 genomes]
rs3896312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3915646	0.86[ASN][1000 genomes]
rs4938776	0.86[ASN][1000 genomes]
rs4938778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58043425	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61095798	1.00[EUR][1000 genomes]
rs6589795	0.91[ASN][1000 genomes]
rs6589798	0.91[ASN][1000 genomes]
rs6589800	0.96[ASN][1000 genomes]
rs6589801	0.96[ASN][1000 genomes]
rs7109733	0.86[ASN][1000 genomes]
rs7118773	0.89[ASN][1000 genomes]
rs7131339	0.93[ASN][1000 genomes]
rs7938843	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1050132	chr11:119976310-120010437	Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119966800-119978200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:119973800-119978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:119975200-119980400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:119976400-119978400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:119976400-119979400	Enhancers	Brain Cingulate Gyrus	brain
6	chr11:119976400-119979400	Enhancers	Brain Hippocampus Middle	brain
7	chr11:119976400-119979600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:119976600-119979600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:119976800-119977800	Weak transcription	Brain Angular Gyrus	brain
10	chr11:119977000-119977800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:119977000-119978800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:119977200-119977400	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links