Variant report

Variant	rs6589800
Chromosome Location	chr11:119971706-119971707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:119970962..119972901-chr11:119974619..119976436,2	K562	blood:
2	chr11:119970916..119973729-chr11:119974619..119976979,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1073634	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1073636	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892536	0.88[ASN][1000 genomes]
rs10892538	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10892542	0.98[ASN][1000 genomes]
rs1107149	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1110703	0.92[AFR][1000 genomes]
rs1110704	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1110705	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11217678	0.84[ASN][1000 genomes]
rs11217679	0.81[ASN][1000 genomes]
rs11217683	0.88[ASN][1000 genomes]
rs11217684	0.88[ASN][1000 genomes]
rs11217685	0.84[ASN][1000 genomes]
rs11217690	0.88[ASN][1000 genomes]
rs11217691	0.95[ASN][1000 genomes]
rs11217692	0.96[ASN][1000 genomes]
rs11217693	0.90[ASN][1000 genomes]
rs11217694	0.96[ASN][1000 genomes]
rs11217696	0.96[ASN][1000 genomes]
rs11217697	0.95[ASN][1000 genomes]
rs11604169	0.96[ASN][1000 genomes]
rs12417601	0.98[ASN][1000 genomes]
rs12418174	0.88[ASN][1000 genomes]
rs12418635	0.89[ASN][1000 genomes]
rs12419706	0.91[ASN][1000 genomes]
rs12421654	0.98[ASN][1000 genomes]
rs2276159	0.96[ASN][1000 genomes]
rs2368961	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs3895896	0.84[ASN][1000 genomes]
rs3896312	0.88[ASN][1000 genomes]
rs3915646	0.86[ASN][1000 genomes]
rs4938776	0.86[ASN][1000 genomes]
rs4938778	0.88[ASN][1000 genomes]
rs4938780	0.82[AFR][1000 genomes]
rs57144901	0.96[ASN][1000 genomes]
rs58043425	0.96[ASN][1000 genomes]
rs6589795	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6589796	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6589798	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6589799	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6589801	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589802	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7109733	0.86[ASN][1000 genomes]
rs7118773	0.89[ASN][1000 genomes]
rs7131339	0.97[ASN][1000 genomes]
rs7938843	0.97[ASN][1000 genomes]
rs7946597	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119966800-119978200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:119969000-119973400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:119970000-119973000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119970400-119973200	Weak transcription	Fetal Intestine Small	intestine

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