Variant report

Variant	rs6589796
Chromosome Location	chr11:119970538-119970539
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10160467	0.87[AFR][1000 genomes]
rs1073634	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1073636	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs10892535	0.83[AFR][1000 genomes]
rs10892537	0.84[AFR][1000 genomes]
rs1107149	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1110703	0.80[AFR][1000 genomes]
rs1110704	0.80[AFR][1000 genomes]
rs1110705	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1629201	0.83[AFR][1000 genomes]
rs1629347	0.83[AFR][1000 genomes]
rs1670196	0.83[AFR][1000 genomes]
rs1670197	0.83[AFR][1000 genomes]
rs1670198	0.83[AFR][1000 genomes]
rs1787025	0.83[AFR][1000 genomes]
rs1787026	0.83[AFR][1000 genomes]
rs1787027	0.83[AFR][1000 genomes]
rs1790472	0.83[AFR][1000 genomes]
rs594081	0.84[AFR][1000 genomes]
rs600484	0.83[AFR][1000 genomes]
rs605833	0.84[AFR][1000 genomes]
rs610075	0.83[AFR][1000 genomes]
rs611656	0.83[AFR][1000 genomes]
rs613004	0.83[AFR][1000 genomes]
rs623353	0.82[AFR][1000 genomes]
rs637464	0.84[AFR][1000 genomes]
rs639775	0.83[AFR][1000 genomes]
rs654884	0.83[AFR][1000 genomes]
rs6589795	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6589797	0.84[AFR][1000 genomes]
rs6589798	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs6589799	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6589800	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6589801	0.82[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs6589802	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688050	0.83[AFR][1000 genomes]
rs688051	0.83[AFR][1000 genomes]
rs694639	0.83[AFR][1000 genomes]
rs7118773	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv508657	chr11:119891578-119971212	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119966800-119978200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:119969000-119973400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:119970000-119973000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:119970400-119973200	Weak transcription	Fetal Intestine Small	intestine

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