Variant report

Variant	rs11604169
Chromosome Location	chr11:119986119-119986120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:119985491..119987184-chr11:119990627..119992257,2	K562	blood:
2	chr11:119977572..119979353-chr11:119984796..119987376,2	MCF-7	breast:
3	chr11:119984697..119987587-chr11:119987923..119989754,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137699	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1073634	0.96[ASN][1000 genomes]
rs1073636	0.96[ASN][1000 genomes]
rs10892536	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10892538	0.95[ASN][1000 genomes]
rs10892542	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1110704	0.90[ASN][1000 genomes]
rs11217678	0.84[ASN][1000 genomes]
rs11217679	0.81[ASN][1000 genomes]
rs11217683	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11217684	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11217685	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11217690	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11217691	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11217692	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11217693	0.90[ASN][1000 genomes]
rs11217694	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11217696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11217697	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11217699	0.81[AMR][1000 genomes]
rs11604587	1.00[AFR][1000 genomes]
rs11607854	1.00[AFR][1000 genomes]
rs12417601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418174	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12418635	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12419706	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12421654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2276159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368961	0.93[ASN][1000 genomes]
rs3781667	0.86[AMR][1000 genomes]
rs3781668	0.86[AMR][1000 genomes]
rs3781669	0.86[AMR][1000 genomes]
rs3895896	0.84[ASN][1000 genomes]
rs3896312	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3915646	0.86[ASN][1000 genomes]
rs4938776	0.86[ASN][1000 genomes]
rs4938778	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs57144901	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs58043425	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6589795	0.91[ASN][1000 genomes]
rs6589798	0.91[ASN][1000 genomes]
rs6589800	0.96[ASN][1000 genomes]
rs6589801	0.96[ASN][1000 genomes]
rs7109733	0.86[ASN][1000 genomes]
rs7118773	0.89[ASN][1000 genomes]
rs7131339	0.93[ASN][1000 genomes]
rs7938843	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054057	chr11:119781953-120519770	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv541178	chr11:119781953-120519770	Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1050132	chr11:119976310-120010437	Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:119979600-119988800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:119981400-119987800	Strong transcription	Esophagus	oesophagus
3	chr11:119981600-119987800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:119981800-119987800	Strong transcription	NHEK	skin
5	chr11:119981800-119991200	Strong transcription	HMEC	breast
6	chr11:119981800-119991400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:119982000-119990600	Strong transcription	Placenta	Placenta
8	chr11:119983600-119989000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:119984200-119986200	Weak transcription	Fetal Thymus	thymus
10	chr11:119985400-119987400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:119985400-119993000	Weak transcription	Right Atrium	heart
12	chr11:119985600-119986200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr11:119985800-119991200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:119986000-119986800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:119986000-119988800	Weak transcription	Hela-S3	cervix

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