Variant report

Variant	rs4939536
Chromosome Location	chr11:55640708-55640709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10400385	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11231723	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12574291	0.90[ASN][1000 genomes]
rs12575159	0.84[ASN][1000 genomes]
rs12575825	0.95[ASN][1000 genomes]
rs12576374	0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12577188	0.88[ASN][1000 genomes]
rs12577454	0.88[ASN][1000 genomes]
rs12577805	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12789462	0.84[ASN][1000 genomes]
rs12795528	0.88[ASN][1000 genomes]
rs12797117	1.00[ASN][1000 genomes]
rs12806436	0.90[ASN][1000 genomes]
rs1384101	0.82[AMR][1000 genomes]
rs17149110	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2512721	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34111760	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34169676	0.95[ASN][1000 genomes]
rs34196662	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34220877	0.88[ASN][1000 genomes]
rs34285376	0.84[ASN][1000 genomes]
rs34495977	1.00[ASN][1000 genomes]
rs34767099	0.88[ASN][1000 genomes]
rs34770287	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35607186	0.84[ASN][1000 genomes]
rs35902814	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs36070669	0.88[ASN][1000 genomes]
rs36080381	1.00[ASN][1000 genomes]
rs36088468	0.95[ASN][1000 genomes]
rs4312084	0.90[ASN][1000 genomes]
rs67425210	0.88[ASN][1000 genomes]
rs7105199	0.84[ASN][1000 genomes]
rs7114268	1.00[ASN][1000 genomes]
rs9667319	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9667708	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv554800	chr11:55083434-55695985	ZNF genes & repeats Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
6	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
9	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
10	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
11	nsv832158	chr11:55550160-55701309	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv972028	chr11:55634700-55663452	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:55640000-55640800	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:55640000-55641000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:55640000-55641000	ZNF genes & repeats	Fetal Brain Female	brain
4	chr11:55640200-55640800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:55640200-55640800	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr11:55640200-55640800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:55640200-55641200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
8	chr11:55640400-55640800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
9	chr11:55640400-55640800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:55640400-55640800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:55640400-55641000	Active TSS	Pancreas	Pancrea
12	chr11:55640600-55641200	Active TSS	Duodenum Smooth Muscle	Duodenum

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