Variant report

Variant	rs4942674
Chromosome Location	chr13:48292845-48292846
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10507561	0.80[CHB][hapmap]
rs11616217	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11619611	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs12429525	0.93[ASN][1000 genomes]
rs12430596	0.90[ASN][1000 genomes]
rs17337616	0.93[ASN][1000 genomes]
rs1924787	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1924788	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1924789	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1924790	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs1924803	0.80[CHB][hapmap]
rs1924808	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2077433	0.82[JPT][hapmap]
rs2078156	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2147495	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2147496	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2147497	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2406597	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs34197720	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34248686	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs35125163	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs35773785	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4941603	0.93[ASN][1000 genomes]
rs4941604	0.89[ASN][1000 genomes]
rs4942669	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs4942670	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4942671	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4942672	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4942675	0.82[AMR][1000 genomes]
rs5006925	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs5006926	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs5006927	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs56403806	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs56787476	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57427955	0.93[ASN][1000 genomes]
rs57463101	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61975710	0.91[ASN][1000 genomes]
rs66962978	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs67796821	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs68115109	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs72623335	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7324861	0.80[CHB][hapmap]
rs7326753	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs7489854	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7986517	0.93[ASN][1000 genomes]
rs9526381	0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs9526382	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9526383	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9526384	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9526385	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9526386	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9526395	0.82[JPT][hapmap]
rs9526396	0.82[JPT][hapmap]
rs9534754	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9534755	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9534756	0.91[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs9534757	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9534759	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs9534771	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900066	chr13:48234112-48292845	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1047818	chr13:48264618-48327155	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv1052701	chr13:48273757-48326134	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:48292800-48293200	Enhancers	Stomach Smooth Muscle	stomach

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