Variant report
| Variant | rs7324861 |
|---|---|
| Chromosome Location | chr13:48338147-48338148 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:48338058..48339804-chr13:48349149..48350961,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10507561 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1924803 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2077433 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs4119501 | 0.96[ASN][1000 genomes] |
| rs4119502 | 0.96[ASN][1000 genomes] |
| rs4941609 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4942691 | 0.90[ASN][1000 genomes] |
| rs4942692 | 0.90[ASN][1000 genomes] |
| rs4942694 | 1.00[ASN][1000 genomes] |
| rs59890896 | 0.90[ASN][1000 genomes] |
| rs61972192 | 0.96[ASN][1000 genomes] |
| rs61975710 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7326753 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs7981324 | 0.96[ASN][1000 genomes] |
| rs7982387 | 0.96[ASN][1000 genomes] |
| rs7988528 | 0.96[ASN][1000 genomes] |
| rs7989376 | 0.96[ASN][1000 genomes] |
| rs9526394 | 0.90[ASN][1000 genomes] |
| rs9526395 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs9526396 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs9534812 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9534822 | 0.99[ASN][1000 genomes] |
| rs9534830 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832600 | chr13:48183118-48341417 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3510679 | chr13:48236624-48498185 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3510680 | chr13:48236624-48498185 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv561589 | chr13:48251736-48420218 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv974088 | chr13:48337681-48341502 | Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7324861 | LPAR6 | cis | lymphoblastoid | seeQTL |
Chromatin state (count:0 , 50 per page) page:
| No data |
