Variant report

Variant	rs59890896
Chromosome Location	chr13:48321393-48321394
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SUCLA2-8	chr13:48321381-48321699	NONHSAT033685

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12429525	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12430596	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17337616	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1924808	0.80[AMR][1000 genomes]
rs2147495	0.80[AMR][1000 genomes]
rs2147496	0.80[AMR][1000 genomes]
rs2147497	0.80[AMR][1000 genomes]
rs2224914	0.87[EUR][1000 genomes]
rs2406597	0.80[AMR][1000 genomes]
rs34248686	0.81[AMR][1000 genomes]
rs4119501	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4119502	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4941603	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4941604	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4941609	0.90[ASN][1000 genomes]
rs4942691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4942694	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5006925	0.80[AMR][1000 genomes]
rs5006926	0.80[AMR][1000 genomes]
rs5006927	0.80[AMR][1000 genomes]
rs56787476	0.81[AMR][1000 genomes]
rs57427955	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs57463101	0.82[AMR][1000 genomes]
rs61972192	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7324490	0.88[EUR][1000 genomes]
rs7981324	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7982387	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7986517	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7988528	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7989376	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7999699	0.89[EUR][1000 genomes]
rs9526394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9534756	0.80[AMR][1000 genomes]
rs9534757	0.80[AMR][1000 genomes]
rs9534759	0.81[AMR][1000 genomes]
rs9534771	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9534812	0.90[ASN][1000 genomes]
rs9534822	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9534830	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832600	chr13:48183118-48341417	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3510679	chr13:48236624-48498185	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3510680	chr13:48236624-48498185	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv561589	chr13:48251736-48420218	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1047818	chr13:48264618-48327155	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv1052701	chr13:48273757-48326134	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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