Variant report
| Variant | rs9534812 |
|---|---|
| Chromosome Location | chr13:48337538-48337539 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NUDT15-5 | chr13:48337520-48337603 | NONHSAT033686 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs4119501 | 0.96[ASN][1000 genomes] |
| rs4119502 | 0.96[ASN][1000 genomes] |
| rs4941609 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4942691 | 0.90[ASN][1000 genomes] |
| rs4942692 | 0.90[ASN][1000 genomes] |
| rs4942694 | 1.00[ASN][1000 genomes] |
| rs59890896 | 0.90[ASN][1000 genomes] |
| rs61972192 | 0.96[ASN][1000 genomes] |
| rs61975710 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs7981324 | 0.96[ASN][1000 genomes] |
| rs7982387 | 0.96[ASN][1000 genomes] |
| rs7988528 | 0.96[ASN][1000 genomes] |
| rs7989376 | 0.96[ASN][1000 genomes] |
| rs9526394 | 0.90[ASN][1000 genomes] |
| rs9534822 | 0.99[ASN][1000 genomes] |
| rs9534830 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832600 | chr13:48183118-48341417 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3510679 | chr13:48236624-48498185 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | esv3510680 | chr13:48236624-48498185 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv561589 | chr13:48251736-48420218 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
