Variant report

Variant	rs4943514
Chromosome Location	chr13:38030444-38030445
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11616246	1.00[ASN][1000 genomes]
rs12429268	0.85[AFR][1000 genomes]
rs12866363	0.89[ASN][1000 genomes]
rs12867234	0.89[ASN][1000 genomes]
rs12867661	1.00[ASN][1000 genomes]
rs12873916	0.89[ASN][1000 genomes]
rs12873927	0.89[ASN][1000 genomes]
rs12875580	1.00[ASN][1000 genomes]
rs1407607	0.87[ASN][1000 genomes]
rs1407608	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17055796	0.89[ASN][1000 genomes]
rs2273893	1.00[ASN][1000 genomes]
rs2281696	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34192378	0.88[ASN][1000 genomes]
rs35796075	0.89[ASN][1000 genomes]
rs4941869	0.85[AFR][1000 genomes]
rs71439726	0.98[ASN][1000 genomes]
rs9315493	0.84[ASN][1000 genomes]
rs9547882	0.85[AFR][1000 genomes]
rs9566225	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs9566226	0.89[CHB][hapmap];0.80[GIH][hapmap];0.84[ASN][1000 genomes]
rs9576270	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9576273	1.00[ASN][1000 genomes]
rs9576274	1.00[ASN][1000 genomes]
rs9576275	1.00[ASN][1000 genomes]
rs9576278	0.89[ASN][1000 genomes]
rs9576281	0.84[ASN][1000 genomes]
rs9576282	0.84[ASN][1000 genomes]
rs9576283	0.84[ASN][1000 genomes]
rs9635082	1.00[ASN][1000 genomes]
rs9635084	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38026800-38031600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr13:38027000-38034200	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:38027600-38034400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:38028000-38031800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:38028000-38034600	Weak transcription	Osteobl	bone

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