Variant report

Variant	rs9576270
Chromosome Location	chr13:38019839-38019840
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11616246	0.91[ASN][1000 genomes]
rs12866363	0.80[ASN][1000 genomes]
rs12867234	0.80[ASN][1000 genomes]
rs12867661	0.91[ASN][1000 genomes]
rs12873916	0.80[ASN][1000 genomes]
rs12873927	0.80[ASN][1000 genomes]
rs12875580	0.91[ASN][1000 genomes]
rs1407608	0.83[EUR][1000 genomes]
rs17055796	0.80[ASN][1000 genomes]
rs2273893	0.91[ASN][1000 genomes]
rs2281696	0.84[EUR][1000 genomes]
rs34192378	0.80[ASN][1000 genomes]
rs35796075	0.80[ASN][1000 genomes]
rs4943514	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71439726	0.89[ASN][1000 genomes]
rs9576273	0.91[ASN][1000 genomes]
rs9576274	0.91[ASN][1000 genomes]
rs9576275	0.91[ASN][1000 genomes]
rs9576278	0.80[ASN][1000 genomes]
rs9635082	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv899994	chr13:37816086-38087145	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832582	chr13:37943056-38124252	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38017800-38020200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:38017800-38020200	Weak transcription	HSMMtube	muscle
3	chr13:38017800-38020400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:38017800-38020400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr13:38017800-38020400	Weak transcription	HMEC	breast
6	chr13:38017800-38020600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:38018000-38020200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:38018200-38020200	Weak transcription	NHEK	skin
9	chr13:38018400-38020000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:38018400-38020200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr13:38018400-38020200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:38018400-38020200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr13:38018400-38020200	Weak transcription	Osteobl	bone
14	chr13:38018600-38020200	Weak transcription	NHDF-Ad	bronchial
15	chr13:38019600-38020400	Enhancers	Muscle Satellite Cultured Cells	--

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