Variant report

Variant	rs4944702
Chromosome Location	chr11:87081237-87081238
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:87078820..87081451-chr11:87082089..87084879,2	K562	blood:
2	chr11:87079816..87081973-chr11:87112546..87114739,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10501635	0.86[CHB][hapmap]
rs1074356	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10792947	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10792948	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10898670	0.86[ASN][1000 genomes]
rs10898671	0.85[ASN][1000 genomes]
rs10898672	0.85[ASN][1000 genomes]
rs12282551	0.86[ASN][1000 genomes]
rs12292705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17149955	0.86[CHB][hapmap]
rs2186723	0.85[ASN][1000 genomes]
rs2186724	0.85[ASN][1000 genomes]
rs34611035	0.85[ASN][1000 genomes]
rs35841298	0.85[ASN][1000 genomes]
rs4318005	1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4480563	0.85[ASN][1000 genomes]
rs4644661	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87048400-87095400	Weak transcription	Aorta	Aorta
2	chr11:87071200-87088200	Weak transcription	Liver	Liver
3	chr11:87077600-87088600	Weak transcription	Left Ventricle	heart
4	chr11:87078400-87081400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:87079200-87082400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:87079200-87082800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:87079400-87081400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr11:87079400-87081400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr11:87079400-87081400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr11:87079400-87082000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr11:87079600-87082200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:87080000-87085200	Weak transcription	Adipose Nuclei	Adipose
13	chr11:87080400-87081400	Enhancers	NHEK	skin
14	chr11:87080400-87081800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:87080400-87084000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:87080600-87081600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:87080600-87081600	Enhancers	HUVEC	blood vessel
18	chr11:87080600-87084000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr11:87080800-87081800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr11:87081200-87081800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:87081200-87082200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr11:87081200-87082200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:87081200-87082400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:87081200-87084200	Weak transcription	Fetal Kidney	kidney
25	chr11:87081200-87086200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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