Variant report

Variant	rs4944811
Chromosome Location	chr11:72577083-72577084
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2365906	1.00[MKK][hapmap]
rs2365907	1.00[MKK][hapmap]
rs2449665	1.00[MKK][hapmap]
rs3903492	1.00[MKK][hapmap]
rs493315	1.00[MKK][hapmap]
rs4944017	1.00[MKK][hapmap]
rs4944799	1.00[MKK][hapmap]
rs4944812	1.00[MKK][hapmap]
rs4944817	1.00[MKK][hapmap]
rs508532	1.00[MKK][hapmap]
rs640283	1.00[MKK][hapmap]
rs7122570	1.00[MKK][hapmap]
rs7936863	1.00[MKK][hapmap]
rs7937866	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394774	chr11:72320884-72694077	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72540200-72616600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr11:72540600-72589800	Strong transcription	Primary B cells from cord blood	blood
3	chr11:72543200-72614800	Weak transcription	Psoas Muscle	Psoas
4	chr11:72543400-72603000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:72550000-72600400	Weak transcription	Pancreas	Pancrea
6	chr11:72552200-72580400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:72552400-72597400	Weak transcription	HMEC	breast
8	chr11:72552800-72578000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:72554600-72577800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:72554600-72580400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:72554600-72595800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:72554600-72596600	Weak transcription	Fetal Brain Female	brain
13	chr11:72554800-72578000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr11:72554800-72578200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:72555600-72586400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr11:72555800-72580600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:72555800-72595600	Weak transcription	Thymus	Thymus
18	chr11:72556000-72586400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:72556800-72596600	Weak transcription	Spleen	Spleen
20	chr11:72557600-72577800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:72557600-72595600	Weak transcription	Lung	lung
22	chr11:72560400-72580400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr11:72560600-72580800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr11:72560800-72577600	Weak transcription	Dnd41	blood
25	chr11:72560800-72580800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr11:72561000-72577600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:72561000-72577800	Weak transcription	Placenta	Placenta
28	chr11:72567200-72612200	Weak transcription	Small Intestine	intestine
29	chr11:72568200-72579000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr11:72568400-72582200	Weak transcription	Brain Substantia Nigra	brain
31	chr11:72568600-72582000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:72570200-72577800	Weak transcription	Fetal Thymus	thymus
33	chr11:72571200-72582200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:72571600-72580400	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:72571800-72577600	Weak transcription	Fetal Intestine Large	intestine
36	chr11:72572000-72577600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr11:72572200-72579400	Weak transcription	Fetal Intestine Small	intestine
38	chr11:72573400-72582000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:72573600-72581200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:72574600-72589600	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:72574800-72577400	Enhancers	HUVEC	blood vessel
42	chr11:72574800-72590800	Strong transcription	GM12878-XiMat	blood
43	chr11:72575000-72577200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:72575000-72577200	Enhancers	Fetal Stomach	stomach
45	chr11:72575000-72577200	Enhancers	HSMM	muscle
46	chr11:72575000-72577200	Enhancers	Osteobl	bone
47	chr11:72575000-72578400	Enhancers	NHDF-Ad	bronchial
48	chr11:72575000-72579600	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:72575000-72599200	Weak transcription	Hela-S3	cervix
50	chr11:72575200-72577200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links