Variant report

Variant	rs4945031
Chromosome Location	chr11:71301189-71301190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:71301182-71301232	T-47D	breast:	n/a
2	chr11:71301182-71301232	Hepatocyte	liver:	n/a
3	chr11:71301182-71301232	GM19239	blood:	n/a
4	chr11:71301182-71301232	NT2-D1	testis:	n/a
5	chr11:71301182-71301232	GM06990	blood:	n/a
6	chr11:71301182-71301232	SK-N-SH	brain:	n/a
7	chr11:71301182-71301232	HPAEpiC	pulmonary alveolar:	n/a
8	chr11:71301182-71301232	HRCEpiC	kidney:	n/a
9	chr11:71301182-71301232	BE2_C	brain:	n/a
10	chr11:71301182-71301232	HCPEpiC	choroid plexus:	n/a
11	chr11:71301182-71301232	CMK	blood:	n/a
12	chr11:71301182-71301232	RPTEC	kidney:	n/a
13	chr11:71301182-71301232	HRPEpiC	eye:	n/a
14	chr11:71301182-71301232	BJ	skin:	n/a
15	chr11:71301182-71301232	MCF-7	breast:	n/a
16	chr11:71301182-71301232	HCT-116	colon:	n/a
17	chr11:71301182-71301232	HepG2	liver:	n/a
18	chr11:71301182-71301232	GM12891	blood:	n/a
19	chr11:71301182-71301232	ECC-1	luminal epithelium:	n/a
20	chr11:71301182-71301232	HEEpiC	esophagus:	n/a
21	chr11:71301182-71301232	AG04449	skin:	fetal
22	chr11:71301182-71301232	A549	lung:	n/a
23	chr11:71301182-71301232	LNCaP	prostate:	n/a
24	chr11:71301182-71301232	PrEC	prostate:	n/a
25	chr11:71301182-71301232	HRE	kidney:	n/a
26	chr11:71301182-71301232	HIPEpiC	eye:	n/a
27	chr11:71301182-71301232	GM12892	blood:	n/a
28	chr11:71301182-71301232	PANC-1	pancreas:	n/a
29	chr11:71301182-71301232	AG09319	gingival:	n/a
30	chr11:71301182-71301232	SKMC	muscle:	n/a
31	chr11:71301182-71301232	HMEC	breast:	n/a
32	chr11:71301182-71301232	Caco-2	colon:	n/a
33	chr11:71301182-71301232	PFSK-1	brain:	n/a
34	chr11:71301182-71301232	HNPCEpiC	eye:	n/a
35	chr11:71301182-71301232	NHDF-neo	bronchial:	n/a
36	chr11:71301182-71301232	AG09309	skin:	n/a
37	chr11:71301182-71301232	HL-60	blood:	n/a
38	chr11:71301182-71301232	HCM	heart:	n/a
39	chr11:71301182-71301232	K562	blood:	n/a
40	chr11:71301182-71301232	NHBE	bronchial:	n/a
41	chr11:71301182-71301232	HEK293	kidney:	embryo
42	chr11:71301182-71301232	Jurkat	blood:	n/a
43	chr11:71301182-71301232	NB4	blood:	n/a
44	chr11:71301182-71301232	ovcar-3	ovarian:	n/a
45	chr11:71301182-71301232	SK-N-MC	brain:	n/a
46	chr11:71301182-71301232	ProgFib	skin:	n/a
47	chr11:71301182-71301232	HUVEC	blood vessel:	n/a
48	chr11:71301182-71301232	HAEpiC	amniotic membrane:	n/a
49	chr11:71301182-71301232	H1-hESC	embryonic stem cell:	embryo
50	chr11:71301182-71301232	HCF	heart:	n/a

No data

Variant related genes	Relation type
OR7E87P	CpG island

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	esv3372246	chr11:71223101-71435819	Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1043207	chr11:71293875-71442666	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1037088	chr11:71293875-71538991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv975947	chr11:71295301-71304403	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv975946	chr11:71295301-71315526	Enhancers Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv3527986	chr11:71298409-71620955	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
8	esv3527987	chr11:71298409-71620955	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
9	nsv1036258	chr11:71299175-71523551	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv1041027	chr11:71299175-71527896	Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv1051879	chr11:71299175-71536860	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1044041	chr11:71299175-71538991	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	esv2761682	chr11:71299175-71619923	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
14	nsv555403	chr11:71301189-71430470	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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