Variant report

Variant	rs4945755
Chromosome Location	chr6:106960039-106960040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:106936437..106938176-chr6:106959829..106962092,2	K562	blood:
2	chr6:106952645..106955429-chr6:106959874..106962805,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10499048	0.84[YRI][hapmap]
rs11152999	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11153000	0.91[YRI][hapmap]
rs11752122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340624	0.82[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs1381552	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946758	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62423280	0.86[EUR][1000 genomes]
rs9320172	0.91[YRI][hapmap]
rs9373876	0.86[EUR][1000 genomes]
rs9386570	0.83[YRI][hapmap]
rs9400021	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932155	chr6:106281728-107030467	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532047	chr6:106591482-107143252	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv870375	chr6:106696090-107047892	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1025510	chr6:106791080-106982400	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538404	chr6:106791080-106982400	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:106957000-106962800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:106957200-106961200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:106957200-106961600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:106957200-106962800	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr6:106957400-106960200	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr6:106957400-106962200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:106957400-106963400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr6:106957600-106961000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:106957800-106961400	Active TSS	Right Atrium	heart
10	chr6:106958000-106961000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr6:106958200-106961200	Active TSS	NHDF-Ad	bronchial
12	chr6:106958400-106962000	Active TSS	GM12878-XiMat	blood
13	chr6:106958400-106962200	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr6:106958600-106961000	Active TSS	Aorta	Aorta
15	chr6:106958600-106961000	Active TSS	Gastric	stomach
16	chr6:106958600-106961400	Bivalent/Poised TSS	Psoas Muscle	Psoas
17	chr6:106958800-106960200	Flanking Active TSS	Dnd41	blood
18	chr6:106958800-106961200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:106958800-106961600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr6:106959000-106960200	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr6:106959000-106960400	Flanking Active TSS	HMEC	breast
22	chr6:106959000-106960800	Bivalent Enhancer	Fetal Brain Male	brain
23	chr6:106959000-106960800	Active TSS	Thymus	Thymus
24	chr6:106959000-106961000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
25	chr6:106959200-106960200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr6:106959200-106960200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:106959200-106960200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
28	chr6:106959200-106960200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
29	chr6:106959200-106961000	Active TSS	HSMMtube	muscle
30	chr6:106959200-106962200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:106959400-106960200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:106959400-106960200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr6:106959400-106960200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:106959400-106960200	Flanking Active TSS	HSMM	muscle
35	chr6:106959400-106960200	Flanking Active TSS	Osteobl	bone
36	chr6:106959400-106960400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr6:106959400-106960400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
38	chr6:106959400-106960600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:106959400-106960600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
40	chr6:106959400-106960600	Bivalent/Poised TSS	A549	lung
41	chr6:106959400-106960800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
42	chr6:106959400-106960800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr6:106959400-106960800	Active TSS	HepG2	liver
44	chr6:106959400-106961000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr6:106959400-106961000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr6:106959400-106961000	Active TSS	Breast Myoepithelial Primary Cells	Breast
47	chr6:106959400-106961000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:106959400-106961000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:106959400-106961000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
50	chr6:106959400-106961000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle

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