Variant report

Variant	rs4946526
Chromosome Location	chr6:121252327-121252328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs61546977	0.81[ASN][1000 genomes]
rs6922074	0.80[ASN][1000 genomes]
rs925812	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9320778	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9320786	0.83[ASN][1000 genomes]
rs9387911	0.83[ASN][1000 genomes]
rs9482097	0.81[ASN][1000 genomes]
rs9490078	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9490079	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9490081	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121251800-121252400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr6:121252000-121252400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
3	chr6:121252000-121252400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121252000-121252400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr6:121252000-121252600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr6:121252000-121252600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
7	chr6:121252000-121252600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr6:121252000-121253000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr6:121252000-121253000	Enhancers	Stomach Mucosa	stomach
10	chr6:121252200-121252400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr6:121252200-121252800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr6:121252200-121253200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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