Variant report

Variant	rs61546977
Chromosome Location	chr6:121246222-121246223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12181376	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4267978	0.83[AFR][1000 genomes]
rs4563755	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4946526	0.81[ASN][1000 genomes]
rs56918683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58312744	0.88[AFR][1000 genomes]
rs59461109	0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7756375	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7776425	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs925810	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs925811	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs925812	0.81[ASN][1000 genomes]
rs9320776	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9320786	0.81[ASN][1000 genomes]
rs9387911	0.81[ASN][1000 genomes]
rs9482097	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9490081	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9490082	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9885922	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121243000-121252000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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