Variant report

Variant	rs4267978
Chromosome Location	chr6:121253174-121253175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12181376	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17082894	0.83[EUR][1000 genomes]
rs17082913	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4563755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56918683	0.83[AFR][1000 genomes]
rs58312744	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59461109	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61546977	0.83[AFR][1000 genomes]
rs6901722	0.89[ASN][1000 genomes]
rs7753698	0.89[ASN][1000 genomes]
rs7756375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7776425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs925810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs925811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9320776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9482097	0.86[AFR][1000 genomes]
rs9482101	0.87[ASN][1000 genomes]
rs9482102	0.91[ASN][1000 genomes]
rs9482103	0.91[ASN][1000 genomes]
rs9482104	0.91[ASN][1000 genomes]
rs9490081	0.87[AFR][1000 genomes]
rs9490082	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs9490084	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9490085	0.91[ASN][1000 genomes]
rs9490086	0.91[ASN][1000 genomes]
rs9490087	0.91[ASN][1000 genomes]
rs9490088	0.91[ASN][1000 genomes]
rs9490089	0.91[ASN][1000 genomes]
rs9490091	0.91[ASN][1000 genomes]
rs9490092	0.91[ASN][1000 genomes]
rs9490102	0.89[ASN][1000 genomes]
rs9490103	0.89[ASN][1000 genomes]
rs9490104	0.89[ASN][1000 genomes]
rs9885922	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121252200-121253200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:121252400-121253200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:121252400-121253400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:121252600-121253200	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr6:121252600-121253200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:121252600-121253600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:121252800-121253400	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:121252800-121253600	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:121253000-121253400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:121253000-121256200	Weak transcription	H1 Cell Line	embryonic stem cell

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