Variant report

Variant	rs12181376
Chromosome Location	chr6:121246776-121246777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17082894	0.89[EUR][1000 genomes]
rs17082913	0.91[ASN][1000 genomes]
rs4267978	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4563755	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56918683	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs58312744	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59461109	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61546977	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6901722	0.89[ASN][1000 genomes]
rs7753698	0.89[ASN][1000 genomes]
rs7756375	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7776425	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925810	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs925811	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9320776	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9482097	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9482101	0.87[ASN][1000 genomes]
rs9482102	0.91[ASN][1000 genomes]
rs9482103	0.91[ASN][1000 genomes]
rs9482104	0.91[ASN][1000 genomes]
rs9490082	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9490084	0.87[ASN][1000 genomes]
rs9490085	0.91[ASN][1000 genomes]
rs9490086	0.91[ASN][1000 genomes]
rs9490087	0.91[ASN][1000 genomes]
rs9490088	0.91[ASN][1000 genomes]
rs9490089	0.91[ASN][1000 genomes]
rs9490091	0.91[ASN][1000 genomes]
rs9490092	0.91[ASN][1000 genomes]
rs9490102	0.89[ASN][1000 genomes]
rs9490103	0.89[ASN][1000 genomes]
rs9490104	0.89[ASN][1000 genomes]
rs951159	0.85[ASN][1000 genomes]
rs9885922	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023384	chr6:121235867-121683448	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121243000-121252000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:121246600-121247000	Active TSS	H9 Cell Line	embryonic stem cell

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