Variant report

Variant	rs4946984
Chromosome Location	chr6:109860167-109860168
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10457201	0.81[AFR][1000 genomes]
rs10872041	0.82[AFR][1000 genomes]
rs11966009	0.81[AFR][1000 genomes]
rs1967725	0.81[AFR][1000 genomes]
rs1998812	0.81[AFR][1000 genomes]
rs2064820	0.80[AFR][1000 genomes]
rs2357123	0.82[AFR][1000 genomes]
rs2357125	0.81[AFR][1000 genomes]
rs4435980	0.82[AFR][1000 genomes]
rs4591898	0.82[AFR][1000 genomes]
rs4946986	0.82[AFR][1000 genomes]
rs4946987	0.80[AFR][1000 genomes]
rs4946989	0.81[AFR][1000 genomes]
rs67715693	0.82[AFR][1000 genomes]
rs7454678	0.81[AFR][1000 genomes]
rs7454858	0.81[AFR][1000 genomes]
rs7749386	0.81[AFR][1000 genomes]
rs7754118	0.81[AFR][1000 genomes]
rs7754606	0.81[AFR][1000 genomes]
rs7766766	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9320294	0.83[AFR][1000 genomes]
rs9320295	0.83[AFR][1000 genomes]
rs9320296	0.83[AFR][1000 genomes]
rs9320299	0.82[AFR][1000 genomes]
rs9372216	0.81[AFR][1000 genomes]
rs9374095	0.82[AFR][1000 genomes]
rs9374097	0.83[AFR][1000 genomes]
rs9374098	0.84[AFR][1000 genomes]
rs9374099	0.82[AFR][1000 genomes]
rs9374108	0.81[AFR][1000 genomes]
rs9384713	0.82[AFR][1000 genomes]
rs9384715	0.82[AFR][1000 genomes]
rs9386812	0.82[AFR][1000 genomes]
rs9386813	0.82[AFR][1000 genomes]
rs9386816	0.81[AFR][1000 genomes]
rs9386818	0.81[AFR][1000 genomes]
rs9398204	0.83[AFR][1000 genomes]
rs9400291	0.82[AFR][1000 genomes]
rs9400294	0.82[AFR][1000 genomes]
rs942923	0.81[AFR][1000 genomes]
rs942924	0.81[AFR][1000 genomes]
rs9480973	0.82[AFR][1000 genomes]
rs9480974	0.82[AFR][1000 genomes]
rs9480976	0.82[AFR][1000 genomes]
rs9480982	0.81[AFR][1000 genomes]
rs9487141	0.82[AFR][1000 genomes]
rs9487148	0.81[AFR][1000 genomes]
rs9487156	0.81[AFR][1000 genomes]
rs9487160	0.81[AFR][1000 genomes]
rs9487164	0.81[AFR][1000 genomes]
rs9487168	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4946984	C6orf199	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109838600-109861400	Weak transcription	Thymus	Thymus
2	chr6:109848400-109865600	Weak transcription	Aorta	Aorta
3	chr6:109848400-109870400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:109850800-109870000	Weak transcription	Left Ventricle	heart
5	chr6:109852200-109878400	Weak transcription	Pancreas	Pancrea
6	chr6:109859200-109868000	Weak transcription	Spleen	Spleen
7	chr6:109859200-109873000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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