Variant report

Variant	rs7766766
Chromosome Location	chr6:109862762-109862763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10457201	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10872041	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10872047	0.82[EUR][1000 genomes]
rs11153193	0.86[AFR][1000 genomes]
rs11153195	0.82[EUR][1000 genomes]
rs11153200	0.80[EUR][1000 genomes]
rs1115977	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11966009	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12204769	0.81[EUR][1000 genomes]
rs12215867	0.80[EUR][1000 genomes]
rs12524352	0.81[EUR][1000 genomes]
rs1358759	0.81[EUR][1000 genomes]
rs1474959	0.81[EUR][1000 genomes]
rs1570011	0.83[EUR][1000 genomes]
rs1570012	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1590187	0.81[EUR][1000 genomes]
rs1967725	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1969710	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1969711	0.81[EUR][1000 genomes]
rs1985123	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1998812	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2064820	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2357123	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2357125	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4435980	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4523125	0.81[EUR][1000 genomes]
rs4591898	0.80[EUR][1000 genomes]
rs4607459	0.83[EUR][1000 genomes]
rs4946984	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4946986	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4946987	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4946989	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4946991	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4946992	0.81[EUR][1000 genomes]
rs6568580	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs67715693	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6916239	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6917999	0.80[AFR][1000 genomes]
rs6929823	0.83[EUR][1000 genomes]
rs7453835	0.81[EUR][1000 genomes]
rs7454678	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs7454858	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7749386	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7754118	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7754606	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9320294	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9320295	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9320296	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9320299	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9320304	0.81[EUR][1000 genomes]
rs9320305	0.81[EUR][1000 genomes]
rs9372216	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9374092	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9374094	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9374095	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9374097	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9374098	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9374099	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9374108	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9384710	0.86[EUR][1000 genomes]
rs9384713	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9384715	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9384716	0.82[EUR][1000 genomes]
rs9386812	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9386813	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9386816	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9386818	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9386823	0.81[EUR][1000 genomes]
rs9386824	0.81[EUR][1000 genomes]
rs9386825	0.81[EUR][1000 genomes]
rs9398204	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9398206	0.82[EUR][1000 genomes]
rs9400291	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9400294	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9400295	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9400301	0.81[EUR][1000 genomes]
rs9400307	0.80[AFR][1000 genomes]
rs942923	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs942924	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9480973	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9480974	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9480976	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9480982	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9480984	0.80[EUR][1000 genomes]
rs9487141	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9487148	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9487152	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9487153	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9487156	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9487160	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9487164	0.81[AFR][1000 genomes]
rs9487168	0.83[EUR][1000 genomes]
rs9487169	0.81[EUR][1000 genomes]
rs9487170	0.81[EUR][1000 genomes]
rs9487171	0.81[EUR][1000 genomes]
rs9487176	0.80[EUR][1000 genomes]
rs9986507	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026012	chr6:109851638-109999379	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv604484	chr6:109851937-109997529	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7766766	C6orf199	Cis_1M	lymphoblastoid	RTeQTL
rs7766766	SMPD2	cis	Whole Blood	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109848400-109865600	Weak transcription	Aorta	Aorta
2	chr6:109848400-109870400	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:109850800-109870000	Weak transcription	Left Ventricle	heart
4	chr6:109852200-109878400	Weak transcription	Pancreas	Pancrea
5	chr6:109859200-109868000	Weak transcription	Spleen	Spleen
6	chr6:109859200-109873000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:109860200-109870000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:109860600-109870000	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:109860800-109866400	Weak transcription	Primary T cells from cord blood	blood
10	chr6:109861200-109870200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:109861600-109866400	Weak transcription	Ovary	ovary
12	chr6:109861800-109866400	Weak transcription	Lung	lung
13	chr6:109862200-109866400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:109862200-109867200	Weak transcription	Fetal Thymus	thymus
15	chr6:109862200-109869600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:109862200-109869600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:109862200-109870000	Weak transcription	Primary B cells from cord blood	blood
18	chr6:109862200-109878200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:109862200-109878400	Weak transcription	Thymus	Thymus

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