Variant report
| Variant | rs4957368 |
|---|---|
| Chromosome Location | chr5:41054535-41054536 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr5:41054286-41054537 | A549 | lung: | n/a | chr5:41054405-41054416 chr5:41054406-41054417 |
| 2 | POLR2A | chr5:41054472-41054590 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | CEBPB | chr5:41054294-41054564 | HepG2 | liver: | n/a | chr5:41054405-41054416 chr5:41054406-41054417 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:41052154..41054968-chr5:41055599..41057506,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MROH2B | TF binding region |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs1423392 | 0.84[ASN][1000 genomes] |
| rs1423405 | 0.81[ASN][1000 genomes] |
| rs1582549 | 0.81[ASN][1000 genomes] |
| rs1895428 | 0.81[ASN][1000 genomes] |
| rs325878 | 0.81[ASN][1000 genomes] |
| rs325879 | 0.81[ASN][1000 genomes] |
| rs7726982 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830268 | chr5:40897361-41138366 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv526193 | chr5:41053923-41054934 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
