Variant report

Variant	nsv526193
Chromosome Location	chr5:41053923-41054934
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:41054286-41054537	A549	lung:	n/a	chr5:41054405-41054416 chr5:41054406-41054417
2	CEBPB	chr5:41054354-41054534	IMR90	lung:	n/a	chr5:41054405-41054416 chr5:41054406-41054417
3	CEBPB	chr5:41054321-41054431	H1-hESC	embryonic stem cell:	n/a	chr5:41054405-41054416 chr5:41054406-41054417
4	CEBPB	chr5:41054294-41054564	HepG2	liver:	n/a	chr5:41054405-41054416 chr5:41054406-41054417
5	POLR2A	chr5:41054099-41054204	MCF-7	breast:	n/a	n/a
6	POLR2A	chr5:41054472-41054590	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41052154..41054968-chr5:41055599..41057506,2	K562	blood:

Variant related genes	Relation type
MROH2B	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 94 )

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs77240444	chr5:41054101-41054102	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs183829394	chr5:41054139-41054140	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs552561716	chr5:41054292-41054293	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs544865974	chr5:41054301-41054302	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs565968833	chr5:41054311-41054312	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs325873	chr5:41054323-41054324	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs554484351	chr5:41054330-41054331	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs150686655	chr5:41054369-41054370	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs551396119	chr5:41054392-41054393	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs73090400	chr5:41054422-41054423	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs13168160	chr5:41054438-41054439	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs369085946	chr5:41054465-41054466	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs188379569	chr5:41054472-41054473	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs4957368	chr5:41054535-41054536	Inactive region	TF binding region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs140021867	chr5:41054537-41054538	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs552074538	chr5:41054541-41054542	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs545606450	chr5:41054543-41054544	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs570376627	chr5:41054546-41054547	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs74977022	chr5:41054561-41054562	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:94)

Disease	PMID	Source
Cervical squamous cell carcinoma	21590768	CNVD
Non-small cell lung cancer	20864512	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	16783165	CNVD
Thyroid cancer	19087340	CNVD
Liposarcoma	21253554	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Cervical Cancer	21857958	CNVD
Cervical cancer	21062161	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Ewing''s sarcoma	17952124	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Cervical cancer	18559093	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Colorectal cancer	21645411	CNVD
Gastric cancer	22152101	CNVD
Oesophago-gastric ulcer	22152101	CNVD
Ovarian cancer	21781307	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Lung cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Bladder cancer	21909424	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Cancer	16751803	CNVD
Breast cancer	16608533	CNVD
Autism	22495311	CNVD
Intellectual disability	22102821	CNVD
Prostate cancer	21965145	CNVD
Cancer	21183584	CNVD
Ovarian cancer	20844748	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Non-small cell lung cancer	19010865	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	22286061	CNVD
Ovarian cancer	21720365	CNVD
Lung cancer	18438408	CNVD
Glioma	20126413	CNVD
Non-small cell lung cancer	21829676	CNVD
Breast cancer	22032731	CNVD
Esophageal cancer	20955586	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	19553991	CNVD
Lung cancer	19553991	CNVD
Melanoma	19553991	CNVD
Ovarian cancer	19553991	CNVD
Prostate cancer	19553991	CNVD
Non-small cell lung cancer	17156491	CNVD
Breast cancer	17133270	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Breast cancer	17393978	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Ovarian clear cell carcinoma	19293255	CNVD
Hodgkin''s lymphoma	17606441	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute myeloid leukemia	20729466	CNVD
Hepatocellular carcinoma	18929564	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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