The 2.0 version of rSNPBase
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Variant report
Variant
rs545606450
Chromosome Location
chr5:41054543-41054544
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:2)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
POLR2A
chr5:41054472-41054590
MCF10A-Er-Src
breast:
n/a
n/a
2
CEBPB
chr5:41054294-41054564
HepG2
liver:
n/a
chr5:41054405-41054416
chr5:41054406-41054417
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr5:41052154..41054968-chr5:41055599..41057506,2
K562
blood:
No data
No data
No data
Variant related genes
Relation type
MROH2B
TF binding region
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv830268
chr5:40897361-41138366
Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers
TF binding regionCpG islandChromatin interactive regionlncRNA
7 gene(s)
inside rSNPs
diseases
2
nsv526193
chr5:41053923-41054934
Inactive region
TF binding regionChromatin interactive region
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links