Variant report
| Variant | rs325873 |
|---|---|
| Chromosome Location | chr5:41054323-41054324 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr5:41054321-41054431 | H1-hESC | embryonic stem cell: | n/a | chr5:41054405-41054416 chr5:41054406-41054417 |
| 2 | CEBPB | chr5:41054286-41054537 | A549 | lung: | n/a | chr5:41054405-41054416 chr5:41054406-41054417 |
| 3 | CEBPB | chr5:41054294-41054564 | HepG2 | liver: | n/a | chr5:41054405-41054416 chr5:41054406-41054417 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:41052154..41054968-chr5:41055599..41057506,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MROH2B | TF binding region |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10041397 | 0.84[ASN][1000 genomes] |
| rs1423395 | 0.83[ASN][1000 genomes] |
| rs167815 | 0.90[ASN][1000 genomes] |
| rs325856 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs325863 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs325864 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs325866 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs325867 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs325868 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs325870 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs325871 | 0.99[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs56909233 | 0.83[ASN][1000 genomes] |
| rs618334 | 0.92[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs644800 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs648563 | 0.92[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs67738881 | 0.83[ASN][1000 genomes] |
| rs918608 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv830268 | chr5:40897361-41138366 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv526193 | chr5:41053923-41054934 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
