Variant report

Variant	rs10041397
Chromosome Location	chr5:41112821-41112822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10473235	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10512764	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1423395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1423418	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs167815	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16871019	0.81[CEU][hapmap]
rs170529	0.94[CHB][hapmap]
rs2067542	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2305060	0.81[CEU][hapmap]
rs28470701	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs325853	0.84[CHB][hapmap]
rs325856	0.94[CHB][hapmap]
rs325857	0.88[CHB][hapmap]
rs325858	0.94[CHB][hapmap]
rs325859	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs325860	0.94[CHB][hapmap]
rs325863	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs325864	0.94[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs325866	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs325867	0.94[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs325868	0.94[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs325870	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs325872	0.94[CHB][hapmap]
rs325873	0.84[ASN][1000 genomes]
rs325875	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs325876	0.94[CHB][hapmap];0.85[JPT][hapmap]
rs3805715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3830070	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3830071	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3830072	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3830073	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs387699	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs391243	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs56909233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs618334	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs644800	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs648563	0.85[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67738881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs865093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs918608	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41110200-41114800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr5:41110400-41114600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr5:41111600-41114200	Enhancers	Ovary	ovary
4	chr5:41111600-41114400	Enhancers	NHDF-Ad	bronchial
5	chr5:41112000-41117000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:41112400-41114200	Enhancers	Placenta	Placenta
7	chr5:41112800-41113800	Enhancers	NHLF	lung
8	chr5:41112800-41115600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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