Variant report

Variant	rs3805715
Chromosome Location	chr5:41158489-41158490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10041397	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10473235	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10512764	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11749466	0.81[CEU][hapmap]
rs1423395	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1423418	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs167815	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16871019	0.81[CEU][hapmap]
rs170529	0.89[CHB][hapmap]
rs2067542	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2305060	0.81[CEU][hapmap];0.89[LWK][hapmap]
rs28470701	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs325856	0.89[CHB][hapmap]
rs325857	0.83[CHB][hapmap]
rs325858	0.89[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap]
rs325859	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs325860	0.89[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap]
rs325863	0.89[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap]
rs325864	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs325866	0.89[CHB][hapmap];0.82[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap]
rs325867	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs325868	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs325870	0.89[CHB][hapmap];0.80[CHD][hapmap];0.84[JPT][hapmap]
rs325872	0.89[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.84[JPT][hapmap]
rs325875	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs325876	0.88[CHB][hapmap];0.89[JPT][hapmap]
rs3830070	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3830071	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3830072	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3830073	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs387699	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs391243	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs56909233	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs618334	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs644800	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs648563	0.91[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs67738881	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs865093	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap]
rs918608	0.91[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3805715	PSMB1	trans	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
3	chr5:41153200-41169000	Weak transcription	Pancreas	Pancrea
4	chr5:41155000-41159200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:41155200-41161600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:41156400-41160200	Genic enhancers	Liver	Liver
7	chr5:41156600-41169000	Weak transcription	Fetal Intestine Large	intestine
8	chr5:41157800-41160600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:41157800-41161200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:41157800-41161800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:41158000-41159400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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