Variant report

Variant	rs918608
Chromosome Location	chr5:41152689-41152690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10041397	0.98[ASN][1000 genomes]
rs10473235	0.88[ASN][1000 genomes]
rs10512764	0.89[CHB][hapmap];0.80[ASN][1000 genomes]
rs1423395	0.99[ASN][1000 genomes]
rs1423418	0.91[ASN][1000 genomes]
rs167815	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs170529	0.84[CHB][hapmap]
rs2067542	0.92[ASN][1000 genomes]
rs28470701	0.89[ASN][1000 genomes]
rs325856	0.84[CHB][hapmap]
rs325857	0.80[CHD][hapmap]
rs325858	0.84[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs325859	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs325860	0.84[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs325863	0.84[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs325864	0.83[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs325866	0.84[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs325867	0.84[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs325868	0.84[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs325870	0.84[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs325872	0.84[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs325873	0.82[ASN][1000 genomes]
rs325875	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs325876	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs3805715	0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[ASN][1000 genomes]
rs3830070	0.91[ASN][1000 genomes]
rs3830071	0.91[ASN][1000 genomes]
rs3830072	0.91[ASN][1000 genomes]
rs3830073	0.91[ASN][1000 genomes]
rs387699	0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap]
rs391243	0.83[CHB][hapmap];0.83[JPT][hapmap]
rs56909233	0.99[ASN][1000 genomes]
rs618334	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[ASN][1000 genomes]
rs644800	0.93[ASN][1000 genomes]
rs648563	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs67738881	0.99[ASN][1000 genomes]
rs865093	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs918608	FGF10	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41139800-41182000	Weak transcription	Left Ventricle	heart
2	chr5:41141600-41156400	Strong transcription	Liver	Liver
3	chr5:41151000-41181400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:41151800-41153200	Enhancers	Pancreas	Pancrea
5	chr5:41152000-41152800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:41152000-41152800	Weak transcription	Ovary	ovary
7	chr5:41152000-41153200	Enhancers	Stomach Mucosa	stomach
8	chr5:41152200-41152800	Enhancers	Adipose Nuclei	Adipose
9	chr5:41152400-41156600	Strong transcription	Fetal Intestine Large	intestine
10	chr5:41152600-41153200	Bivalent Enhancer	Gastric	stomach

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