Variant report

Variant	rs648563
Chromosome Location	chr5:41056998-41056999
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:41052154..41054968-chr5:41055599..41057506,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10041397	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10473235	0.84[EUR][1000 genomes]
rs10512764	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs1423395	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1423418	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs167815	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs170529	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs2067542	0.84[EUR][1000 genomes]
rs325853	0.84[CHB][hapmap];0.84[JPT][hapmap];0.92[YRI][hapmap]
rs325856	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs325857	0.88[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs325858	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs325859	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs325860	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs325863	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs325864	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs325866	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs325867	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs325868	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs325870	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs325871	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs325872	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs325873	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs325875	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs325876	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3805715	0.91[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs3830070	0.84[EUR][1000 genomes]
rs3830071	0.84[EUR][1000 genomes]
rs3830072	0.84[EUR][1000 genomes]
rs3830073	0.84[EUR][1000 genomes]
rs387699	1.00[CEU][hapmap];0.83[CHB][hapmap];0.82[YRI][hapmap]
rs391243	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs56909233	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs618334	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs644800	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67738881	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs865093	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap];0.87[YRI][hapmap]
rs918608	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830268	chr5:40897361-41138366	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41056600-41057200	Enhancers	Ovary	ovary

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